1 5' 3' | 2 5' 3' |
CGGCCGAGGGCTCCAAGCGCATGGGCCATAAGGACAGCATTCTAGTAGGCCTGGGCCTGATTCTCTTCCTGTCCTTAACCTGGCTCTACTTCGTGCATAGgtgggtttggcgcgcacgcgttcagggccagaacctggcctgagccaatgagcatttgcattcacactagctttcatttctccgaatgctgtcagctgct...
species | Chlamydomonas reinhardtii |
transcript | EDP04398 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCCTGTCCTTAACCTGGCTTTACTTCGTGCATAG GATGTACCTAAATGTCGCGGGAAGTTCCGCGCCATCGCCAACACCCACACGEST: gi|16433462|gb|BI998688.1|BI998688
genomic: TCCTGTCCTTAACCTGGCTCTACTTCGTGCATAGgtgggtttgg ... ggcgctgcagGATGTACCTAAATGTCGCGGGAAGTTCCGCGCCATCGCCAACACCCACACG
EST: CTGGGCCTGATTCTCTTCCTGTCCTTAACCTGGCTCTACTTCGTGCATAG GATGTACCTAAATGTCGCGGGAAGTTCCGCGCCATCGCCAACACCCACACGEST: gi|15702855|gb|BI727160.1|BI727160
genomic: CTGGGCCTGATTCTCTTCCTGTCCTTAACCTGGCTCTACTTCGTGCATAGgtgggtttgg ... ggcgctgcagGATGTACCTAAATGTCGCGGGAAGTTCCGCGCCATCGCCAACACCCACACG
EST: CTGGGCCTGATTCTCTTCCTGTCCTTAACCTGGCTCTACTTCGTGCATAG GATGTACCTAAATGTCGCGGGAAGTTCCGCGCCATCGCCAACACCCACACGEST: gi|14238982|gb|BG857798.1|BG857798
genomic: CTGGGCCTGATTCTCTTCCTGTCCTTAACCTGGCTCTACTTCGTGCATAGgtgggtttgg ... ggcgctgcagGATGTACCTAAATGTCGCGGGAAGTTCCGCGCCATCGCCAACACCCACACG
EST: CTGGGCCTGATTCTCTTCCTGTCCTTAACCTGGCTCTACTTCGTGCATAG GATGTACCTAAATGTCGCGGGAAGTTCCGCGCCATCGCCAACACCCACACG
genomic: CTGGGCCTGATTCTCTTCCTGTCCTTAACCTGGCTCTACTTCGTGCATAGgtgggtttgg ... ggcgctgcagGATGTACCTAAATGTCGCGGGAAGTTCCGCGCCATCGCCAACACCCACACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCCGAGGGCTCCAAGCGCATGGGCCATAAGGACAGCATTCTAGTAGGCCTGGGCCTGATTCTCTTCCTGTCCTTAACCTGGCTCTACTTCGTGCATAGgtgggtttggcgcgcacgcgttcagggccagaacctggcctgagccaatgagcatttgcattcacactagctttcatttctccgaatgctgtcagctgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcagc