Sequence
atgc intronic sequence ATGC exonic sequence...ccaaagccgcctccggcaagcggcttttctggcgcgtgctgtctctgcaatctcattagcatcggtagccggtgcgcctctctccgtgtctcgcctgtagGTGGTCATCCCCATCCGCCACGGCCCCAGCAAATCGGCCGAGGGCTCCAAGCGCATGGGCCATAAGGACAGCATTCTAGTAGGCCTGGGCCTGATTCTCT
Basic information
species | Chlamydomonas reinhardtii |
transcript | EDP04398 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16433462|gb|BI998688.1|BI998688EST: TCAAGCGATGATGGAGACCAG GTGGTCATCCCCATCCGCCACGGCCCCAGCAAATCGGCCGAGGGCTCCAAG
genomic: TCAAGCGATGATGGAGACCAGgtgggtgcag ... tcgcctgtagGTGGTCATCCCCATCCGCCACGGCCCCAGCAAATCGGCCGAGGGCTCCAAG
EST:
gi|14238982|gb|BG857798.1|BG857798EST: CGGCCTGCGGGCGCGGCCGCGATGAAGTCAAGCGATGATGGAG-CCAAG GTGGTCATCCCCATCCGCCACGGCCCCAGCAAATCGGCCGAGGGCTCCAA
genomic: CGGCCTGCGGGCGCGGCCGCGATGAAGTCAAGCGATGATGGAGACC-AGgtgggtgcag ... tcgcctgtagGTGGTCATCCCCATCCGCCACGGCCCCAGCAAATCGGCCGAGGGCTCCAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcaatctcattagcatcggtagccggtgcgcctctctccgtgtctcgcctgtagGTGGTCATCCCCATCCGCCACGGCCCCAGCAAATCGGCCGAGGGCTCCAAGCGCATGGGCCATAAGGACAGCATTCTAGTAGGCCTGGGCCTGATTCTCT
cctctctccgtgtctc CT-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ccaaagccgcctccggcaagcggcttttctggcgcgtgctgtctctgcaatctcattagcatcggtagccggtgcgcctctctccgtgtctcgcctgtagGTGGTCATCCCCATCCGCCACGGCCCCAGCAAATCGGCCGAGGGCTCCAAGCGCATGGGCCATAAGGACAGCATTCTAGTAGGCCTGGGCCTGATTCTCT
-caaagcc
- - - - - - - - - - - - ttttctg
- - - - - - - - - - - - - - - - - - - - - - - - aatctca