1 5' 3' | 2 5' 3' |
GCGGCACATATAGAAGCTAGTCACACTGCCGGTGCCAGGCGGAGCACGGTCGCGGCCTGCGGGCGCGGCCGCGATGAAGTCAAGCGATGATGGAGACCAGgtgggtgcagtcgctatccgctatgaattgttatgaggtttcaggccgtggcagggcatgcgttgggtagcagcgctggagccttaagcggtggcgtacg...
species | Chlamydomonas reinhardtii |
transcript | EDP04398 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCAAGCGATGATGGAGACCAG GTGGTCATCCCCATCCGCCACGGCCCCAGCAAATCGGCCGAGGGCTCCAAGEST: gi|14238982|gb|BG857798.1|BG857798
genomic: TCAAGCGATGATGGAGACCAGgtgggtgcag ... tcgcctgtagGTGGTCATCCCCATCCGCCACGGCCCCAGCAAATCGGCCGAGGGCTCCAAG
EST: CGGCCTGCGGGCGCGGCCGCGATGAAGTCAAGCGATGATGGAG-CCAAG GTGGTCATCCCCATCCGCCACGGCCCCAGCAAATCGGCCGAGGGCTCCAA
genomic: CGGCCTGCGGGCGCGGCCGCGATGAAGTCAAGCGATGATGGAGACC-AGgtgggtgcag ... tcgcctgtagGTGGTCATCCCCATCCGCCACGGCCCCAGCAAATCGGCCGAGGGCTCCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGGCACATATAGAAGCTAGTCACACTGCCGGTGCCAGGCGGAGCACGGTCGCGGCCTGCGGGCGCGGCCGCGATGAAGTCAAGCGATGATGGAGACCAGgtgggtgcagtcgctatccgctatgaattgttatgaggtttcaggccgtggcagggcatgcgttgggtagcagcgctggagccttaagcggtggcgtacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgcgt