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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCTCCATGAAAAAGCGGATCACCGGCGAGCTGGAGGTCTCAACGGCGGTGCGCTACGCGGACGTGCCCACGCAACGCAAGGCCTCGCCCAAACCGCCGgtgagcgcattccaccgacgcgccgctgccaccacctttgcagacgagcgctgcgctggaggctaggtataacctgccgctcccgctgccttgtgtgaatgtgttggctcgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP04361
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23362966|gb|BU650786.1|BU650786
EST:     TGCGCTACGCGGACGTGCCCACGCAACGCAAGGCCTCGCCCAAACCGCCG                         CCGCAGGCGATGGGCGGCATGGCGGGCATGGCCTCCAAGGTGTCGGCGCCC
genomic: TGCGCTACGCGGACGTGCCCACGCAACGCAAGGCCTCGCCCAAACCGCCGgtgagcgcat ... tggctcgcagCCGCAGGCGATGGGCGGCATGGCGGGCATGGCCTCCAAGGTGTCGGCGCCC
EST: gi|10775560|gb|AV632240.1|AV632240
EST:     TGCGCTACGCGGACGTGCCCACGCAACGCAAGGCCTCGCCCAAACCGCCG                         --GC-G---ATGGGCGGCATGGCGGGCATGGCCTCCAAGGTGTCGG
genomic: TGCGCTACGCGGACGTGCCCACGCAACGCAAGGCCTCGCCCAAACCGCCGgtgagcgcat ... tggctcgcagCCGCAGGCGATGGGCGGCATGGCGGGCATGGCCTCCAAGGTGTCGG
EST: gi|15368318|gb|BI527744.1|BI527744
EST:     TGCGCTACGCGGACGTGCCCACGCAACGCAAGGCCTCGCCCAAACCGCCG                         --GC-G---ATGGGCGGCATGGCGGGCATGGCCTCCAAGGTGTCGGCGCCC
genomic: TGCGCTACGCGGACGTGCCCACGCAACGCAAGGCCTCGCCCAAACCGCCGgtgagcgcat ... tggctcgcagCCGCAGGCGATGGGCGGCATGGCGGGCATGGCCTCCAAGGTGTCGGCGCCC
EST: gi|15696701|gb|BI721006.1|BI721006
EST:     TGCGCTACGCGGACGTGCCCACGCAACGCAAGNCCTCGCCCAAACCGCCG                         CCGCAGGCGATGGGCGGCATGGCGGGCATGGCCTCCAAGGTGTCGGCGCCC
genomic: TGCGCTACGCGGACGTGCCCACGCAACGCAAGGCCTCGCCCAAACCGCCGgtgagcgcat ... tggctcgcagCCGCAGGCGATGGGCGGCATGGCGGGCATGGCCTCCAAGGTGTCGGCGCCC