1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagcgcattccaccgacgcgccgctgccaccacctttgcagacgagcgctgcgctggaggctaggtataacctgccgctcccgctgccttgtgtgaatgtgttggctcgcagCCGCAGGCGATGGGCGGCATGGCGGGCATGGCCTCCAAGGTGTCGGCGCCCAAGCTGCCGGCGGGCGGGCTGCCGGTGGGCTTCGCGGTGCCCACCAACC
species | Chlamydomonas reinhardtii |
transcript | EDP04361 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCGCTACGCGGACGTGCCCACGCAACGCAAGGCCTCGCCCAAACCGCCG CCGCAGGCGATGGGCGGCATGGCGGGCATGGCCTCCAAGGTGTCGGCGCCCEST: gi|10775560|gb|AV632240.1|AV632240
genomic: TGCGCTACGCGGACGTGCCCACGCAACGCAAGGCCTCGCCCAAACCGCCGgtgagcgcat ... tggctcgcagCCGCAGGCGATGGGCGGCATGGCGGGCATGGCCTCCAAGGTGTCGGCGCCC
EST: TGCGCTACGCGGACGTGCCCACGCAACGCAAGGCCTCGCCCAAACCGCCG --GC-G---ATGGGCGGCATGGCGGGCATGGCCTCCAAGGTGTCGGEST: gi|15368318|gb|BI527744.1|BI527744
genomic: TGCGCTACGCGGACGTGCCCACGCAACGCAAGGCCTCGCCCAAACCGCCGgtgagcgcat ... tggctcgcagCCGCAGGCGATGGGCGGCATGGCGGGCATGGCCTCCAAGGTGTCGG
EST: TGCGCTACGCGGACGTGCCCACGCAACGCAAGGCCTCGCCCAAACCGCCG --GC-G---ATGGGCGGCATGGCGGGCATGGCCTCCAAGGTGTCGGCGCCCEST: gi|15696701|gb|BI721006.1|BI721006
genomic: TGCGCTACGCGGACGTGCCCACGCAACGCAAGGCCTCGCCCAAACCGCCGgtgagcgcat ... tggctcgcagCCGCAGGCGATGGGCGGCATGGCGGGCATGGCCTCCAAGGTGTCGGCGCCC
EST: TGCGCTACGCGGACGTGCCCACGCAACGCAAGNCCTCGCCCAAACCGCCG CCGCAGGCGATGGGCGGCATGGCGGGCATGGCCTCCAAGGTGTCGGCGCCC
genomic: TGCGCTACGCGGACGTGCCCACGCAACGCAAGGCCTCGCCCAAACCGCCGgtgagcgcat ... tggctcgcagCCGCAGGCGATGGGCGGCATGGCGGGCATGGCCTCCAAGGTGTCGGCGCCC
aggctaggtataacctgccgctcccgctgccttgtgtgaatgtgttggctcgcagCCGCAGGCGATGGGCGGCATGGCGGGCATGGCCTCCAAGGTGTCGGCGCCCAAGCTGCCGGCGGGCGGGCTGCCGGTGGGCTTCGCGGTGCCCACCAACC
gtataac putative branch site (score: 3)
tataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcgcattccaccgacgcgccgctgccaccacctttgcagacgagcgctgcgctggaggctaggtataacctgccgctcccgctgccttgtgtgaatgtgttggctcgcagCCGCAGGCGATGGGCGGCATGGCGGGCATGGCCTCCAAGGTGTCGGCGCCCAAGCTGCCGGCGGGCGGGCTGCCGGTGGGCTTCGCGGTGCCCACCAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC