1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ggaaggccgtgcctcgcactggtccgcagccggcgcgcccgaaacgcccagaaagtttaaccagtcacgcaaccggtatcctgcggccccggccccgcagGTGGTGGAGATTGAGGCCGCATACGACATCCTGTTCATGCGCTCCATGAAAAAGCGGATCACCGGCGAGCTGGAGGTCTCAACGGCGGTGCGCTACGCGG
species | Chlamydomonas reinhardtii |
transcript | EDP04361 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGCAACAAAAGAACCGCAAGCTCGCGCAGGCCGATGGCGATGTGGACAAG GTGGTGGAGATTGAGGCCGCATACGACATCCTGTTCATGCGCTCCATGAAAEST: gi|10775560|gb|AV632240.1|AV632240
genomic: TGCAACAAAAGAACCGCAAGCTCGCGCAGGCCGATGGCGATGTGGACAAGgtaaaatgac ... ggccccgcagGTGGTGGAGATTGAGGCCGCATACGACATCCTGTTCATGCGCTCCATGAAA
EST: TGCAACAAAAGAACCGCAAGCTCGCGCAGGCCGATGGCGATGTGGACAAG GTGGTGGAGATTGAGGCCGCATACGACATCCTGTTCATGCGCTCCATGAAAEST: gi|15368318|gb|BI527744.1|BI527744
genomic: TGCAACAAAAGAACCGCAAGCTCGCGCAGGCCGATGGCGATGTGGACAAGgtaaaatgac ... ggccccgcagGTGGTGGAGATTGAGGCCGCATACGACATCCTGTTCATGCGCTCCATGAAA
EST: TGCAACAAAAGAACCGCAAGCTCGCGCAGGCCGATGGCGATGTGGACAAG GTGGTGGAGATTGAGGCCGCATACGACATCCTGTTCATGCGCTCCATGAAAEST: gi|15696701|gb|BI721006.1|BI721006
genomic: TGCAACAAAAGAACCGCAAGCTCGCGCAGGCCGATGGCGATGTGGACAAGgtaaaatgac ... ggccccgcagGTGGTGGAGATTGAGGCCGCATACGACATCCTGTTCATGCGCTCCATGAAA
EST: TGCAACAAAAGAACCGCAAGCTCGCGCAGGCCGATGGCGATGTGGACAAG GTGGTGGAGATTGAGGCCGCATACGACATCNTGTTCATGCGCTCCATGAAA
genomic: TGCAACAAAAGAACCGCAAGCTCGCGCAGGCCGATGGCGATGTGGACAAGgtaaaatgac ... ggccccgcagGTGGTGGAGATTGAGGCCGCATACGACATCCTGTTCATGCGCTCCATGAAA
gcccagaaagtttaaccagtcacgcaaccggtatcctgcggccccggccccgcagGTGGTGGAGATTGAGGCCGCATACGACATCCTGTTCATGCGCTCCATGAAAAAGCGGATCACCGGCGAGCTGGAGGTCTCAACGGCGGTGCGCTACGCGG
gtttaac putative branch site (score: 3)
aaagtttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaaggccgtgcctcgcactggtccgcagccggcgcgcccgaaacgcccagaaagtttaaccagtcacgcaaccggtatcctgcggccccggccccgcagGTGGTGGAGATTGAGGCCGCATACGACATCCTGTTCATGCGCTCCATGAAAAAGCGGATCACCGGCGAGCTGGAGGTCTCAACGGCGGTGCGCTACGCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - -tcgcact
- - - - - - - - - - - - - - - - - - - - gaaacgc
- - - - - - - - - - - - - - - - - - - - - - - -ccagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcacgca