1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagtggccgcagcacatctacctaagcatgcctagcgcaacattactgtgtgtatgctaccttgatctcgcactccatgcgcattctgacagcactagcctgtgaaccggcacttgcatgccggtgccagtaatattgcttatcgtctgtacccgaatgaacgggtcgtgccgctgccttcgacgacttgcagACGGTCTTCCTACACTGCTGCGCTCTGCTGCTGCCAAGCTGGACGGCCCCTGGAAGGCGGACAACAAGTAGGCGGGTGGCAACGAGGAGCCGCGACGGCG
species | Chlamydomonas reinhardtii |
transcript | EDP04355 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCGCAGCTCGCTACGGCACCTGGCCAAGCAGCCGGCGGCGCAGGCCATCG ACGGTCTTCCTACACTGCTGCGCTCTGCTGCTGCCAAGCTGGACGGCCCCTEST: gi|161801267|gb|FC088452.1|FC088452
genomic: GCGCAGCTCGCTACGGCACCTGGCCAAGCAGCCGGCGGCGCAGGCCATCGgtgagtggcc ... cgacttgcagACGGTCTTCCTACACTGCTGCGCTCTGCTGCTGCCAAGCTGGACGGCCCCT
EST: GCGCAGCTCGCTACGGCACCTGGCCAAGCAGCCGGCGGCGCAGGCCATCG ACGGTCTTCCTACACTGCTGCGCTCTGCTGCTGCCAAGCTGGACGGCCCCTEST: gi|16432099|gb|BI997325.1|BI997325
genomic: GCGCAGCTCGCTACGGCACCTGGCCAAGCAGCCGGCGGCGCAGGCCATCGgtgagtggcc ... cgacttgcagACGGTCTTCCTACACTGCTGCGCTCTGCTGCTGCCAAGCTGGACGGCCCCT
EST: GCGCAGCTCGCTACGGCACCTGGCCAAGCAGCCGGCGGCGCAGGCCATCG ACGGTCTTCCTACACTGCTGCGCTCTGCTGCTGCCAAGCTGGACGGCCCCTEST: gi|161821046|gb|FC110511.1|FC110511
genomic: GCGCAGCTCGCTACGGCACCTGGCCAAGCAGCCGGCGGCGCAGGCCATCGgtgagtggcc ... cgacttgcagACGGTCTTCCTACACTGCTGCGCTCTGCTGCTGCCAAGCTGGACGGCCCCT
EST: GCGCAGCTCGCTACGGCACCTGGCCAAGCAGCCGGCGGCGCAGGCCATCG ACGGTCTTCCTACACTGCTGCGCTCTGCTGCTGCCAAGCTGGACGGCCCCTEST: gi|161801266|gb|FC088451.1|FC088451
genomic: GCGCAGCTCGCTACGGCACCTGGCCAAGCAGCCGGCGGCGCAGGCCATCGgtgagtggcc ... cgacttgcagACGGTCTTCCTACACTGCTGCGCTCTGCTGCTGCCAAGCTGGACGGCCCCT
EST: GCGCAGCTCGCTACGGCACCTGGCCAAGCAGCCGGCGGCGCAGGCCATCG ACGGTCTTCCTACACTGGTGCGCTCTGCTGCTGCCAAGCTGGACGGCCCCT
genomic: GCGCAGCTCGCTACGGCACCTGGCCAAGCAGCCGGCGGCGCAGGCCATCGgtgagtggcc ... cgacttgcagACGGTCTTCCTACACTGCTGCGCTCTGCTGCTGCCAAGCTGGACGGCCCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtggccgcagcacatctacctaagcatgcctagcgcaacattactgtgtgtatgctaccttgatctcgcactccatgcgcattctgacagcactagcctgtgaaccggcacttgcatgccggtgccagtaatattgcttatcgtctgtacccgaatgaacgggtcgtgccgctgccttcgacgacttgcagACGGTCTTCCTACACTGCTGCGCTCTGCTGCTGCCAAGCTGGACGGCCCCTGGAAGGCGGACAACAAGTAGGCGGGTGGCAACGAGGAGCCGCGACGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG