1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gggtacggtgcagtaactgctggataaatgcagctgacgttggccgtccttcaagcctggtaaggcgctaaccagtttcctcaacgccgcggccctgcagGTTGGCGCCTTTGCTGACCCTGGCCGCGACCCCCGCGGCTGGACCGTGACGGTGGCTTACGCTGCGCTGGTGCCCTCGACCGAGCTGGGAGTAAAGGCGG
species | Chlamydomonas reinhardtii |
transcript | EDP04355 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCTGCAGGAGGAGACGTCGGTGGACCCCGCGTCCGTGTCCATGACCCAG GTTGGCGCCTTTGCTGACCCTGGCCGCGACCCCCGCGGCTGGACCGTGACGEST: gi|161801267|gb|FC088452.1|FC088452
genomic: AGCTGCAGGAGGAGACGTCGGTGGACCCCGCGTCCGTGTCCATGACCCAGgtgcgcgggt ... ggccctgcagGTTGGCGCCTTTGCTGACCCTGGCCGCGACCCCCGCGGCTGGACCGTGACG
EST: AGCTGCAGGAGGAGACGTCAGTGGACCCCGCGTCCGTGTCCATGACCCAG GTTGGCGCCTTTGCTGACCCTGGCCGCGACCCCCGCGGCTGGACCGTGACGEST: gi|161821046|gb|FC110511.1|FC110511
genomic: AGCTGCAGGAGGAGACGTCGGTGGACCCCGCGTCCGTGTCCATGACCCAGgtgcgcgggt ... ggccctgcagGTTGGCGCCTTTGCTGACCCTGGCCGCGACCCCCGCGGCTGGACCGTGACG
EST: AGCTGCAGGAGGAGACGTCAGTGGACCCCGCGTCCGTGTCCATGACCCAG GTTGGCGCCTTTGCTGACCCTGGCCGCGACCCCCGCGGCTGGACCGTGACGEST: gi|6545088|gb|AV390872.1|AV390872
genomic: AGCTGCAGGAGGAGACGTCGGTGGACCCCGCGTCCGTGTCCATGACCCAGgtgcgcgggt ... ggccctgcagGTTGGCGCCTTTGCTGACCCTGGCCGCGACCCCCGCGGCTGGACCGTGACG
EST: AGCTGCAGGAGGAGACGTCGGTGGACCCCGCGTCCGTGTCCATGACCCAG GTTGGCGCCTTTGCTGACCCTGGCCGCGACCCCCGCGGCTGGACCGTGACGEST: gi|15703550|gb|BI727855.1|BI727855
genomic: AGCTGCAGGAGGAGACGTCGGTGGACCCCGCGTCCGTGTCCATGACCCAGgtgcgcgggt ... ggccctgcagGTTGGCGCCTTTGCTGACCCTGGCCGCGACCCCCGCGGCTGGACCGTGACG
EST: AGCTGCAGGAGGAGACGTCGGTGGACCCCGCGTCCGTGTCCATGACCCAG GTTGGCGCCTTTGCTGACCCTGGCCGCGACCCCCGCGGCTGGACCGTGACGEST: gi|15691882|gb|BI716203.1|BI716203
genomic: AGCTGCAGGAGGAGACGTCGGTGGACCCCGCGTCCGTGTCCATGACCCAGgtgcgcgggt ... ggccctgcagGTTGGCGCCTTTGCTGACCCTGGCCGCGACCCCCGCGGCTGGACCGTGACG
EST: AGCTGCAGGAGGAGACGTCGGTGGACCCCGCGTCCGTGTCCATGACCCAG GTTGGCGCCTTTGCTGACCCTGGCCGCGACCCCCGCGGCTGGACCGTGACGEST: gi|16432100|gb|BI997326.1|BI997326
genomic: AGCTGCAGGAGGAGACGTCGGTGGACCCCGCGTCCGTGTCCATGACCCAGgtgcgcgggt ... ggccctgcagGTTGGCGCCTTTGCTGACCCTGGCCGCGACCCCCGCGGCTGGACCGTGACG
EST: AGCTGCAGGAGGAGACGTCGGTGGACCCCGCGTCCGTGTCCATGACCCAG GTTGGCGCCTTTGCTGACCCTGGCCGCGACCCCCGCGGCTGGACCGTGACG
genomic: AGCTGCAGGAGGAGACGTCGGTGGACCCCGCGTCCGTGTCCATGACCCAGgtgcgcgggt ... ggccctgcagGTTGGCGCCTTTGCTGACCCTGGCCGCGACCCCCGCGGCTGGACCGTGACG
gtccttcaagcctggtaaggcgctaaccagtttcctcaacgccgcggccctgcagGTTGGCGCCTTTGCTGACCCTGGCCGCGACCCCCGCGGCTGGACCGTGACGGTGGCTTACGCTGCGCTGGTGCCCTCGACCGAGCTGGGAGTAAAGGCGG
cgctaac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggtacggtgcagtaactgctggataaatgcagctgacgttggccgtccttcaagcctggtaaggcgctaaccagtttcctcaacgccgcggccctgcagGTTGGCGCCTTTGCTGACCCTGGCCGCGACCCCCGCGGCTGGACCGTGACGGTGGCTTACGCTGCGCTGGTGCCCTCGACCGAGCTGGGAGTAAAGGCGG
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