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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGCCGGCGATGACCGTGGACGCAATTATTGTGTCGCAGCCGACGCCTGCCAGCCCCGCACAGCTACTGCTCATCCGCCGCAAGTTTGACCCCTTCAAGgtaagtagttggggggcgggcatggcttgccagtttccttcctggagtcagccacacttggctgcgccatcctgtttagcactttcttactgtgtcgagttgcatgcgtattctttcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP04355
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10772323|gb|AV623146.1|AV623146
EST:     CCAGCCCCGCACAGCTACTGCTCATCCGCCGCAAGTTTGACCCCTTCAAG                         GACTCGTGGGCGCTGCCAGGTGGCTTTGTTGACGCCGGTGAGGGCCTGGAC
genomic: CCAGCCCCGCACAGCTACTGCTCATCCGCCGCAAGTTTGACCCCTTCAAGgtaagtagtt ... attctttcagGACTCGTGGGCGCTGCCAGGTGGCTTTGTTGACGCCGGTGAGGGCCTGGAC
EST: gi|161801267|gb|FC088452.1|FC088452
EST:     CCAGCCCGGCACAGCTACTGCTCATCCGCCGCAAGTTTGACCCCTTCAAG                         GACTCGTGGGCGCTGCCAGGTGGCTTCGTTGACGCCGGTGAGGGCCTGGAC
genomic: CCAGCCCCGCACAGCTACTGCTCATCCGCCGCAAGTTTGACCCCTTCAAGgtaagtagtt ... attctttcagGACTCGTGGGCGCTGCCAGGTGGCTTTGTTGACGCCGGTGAGGGCCTGGAC
EST: gi|161821046|gb|FC110511.1|FC110511
EST:     CCAGCCCGGCACAGCTACTGCTCATCCGCCGCAAGTTTGACCCCTTCAAG                         GACTCGTGGGCGCTGCCAGGTGGCTTCGTTGACGCCGGTGAGGGCCTGGAC
genomic: CCAGCCCCGCACAGCTACTGCTCATCCGCCGCAAGTTTGACCCCTTCAAGgtaagtagtt ... attctttcagGACTCGTGGGCGCTGCCAGGTGGCTTTGTTGACGCCGGTGAGGGCCTGGAC
EST: gi|6545088|gb|AV390872.1|AV390872
EST:     CCAGCCCCGCACAGCTACTGCTCATCCGCCGCAAGTTTGACCCCTTCAAG                         GACTCGTGGGCGCTGCCAGGTGGCTTTGTTGACGCCGGTGAGGGCCTGGAC
genomic: CCAGCCCCGCACAGCTACTGCTCATCCGCCGCAAGTTTGACCCCTTCAAGgtaagtagtt ... attctttcagGACTCGTGGGCGCTGCCAGGTGGCTTTGTTGACGCCGGTGAGGGCCTGGAC
EST: gi|15703550|gb|BI727855.1|BI727855
EST:     CCAGCCCCGCACAGCTACTGCTCATCCGCCGCAAGTTTGACCCCTTCAAG                         GACTCGTGGGCGCTGCCAGGTGGCTTTGTTGACGCCGGTGAGGGCCTGGAC
genomic: CCAGCCCCGCACAGCTACTGCTCATCCGCCGCAAGTTTGACCCCTTCAAGgtaagtagtt ... attctttcagGACTCGTGGGCGCTGCCAGGTGGCTTTGTTGACGCCGGTGAGGGCCTGGAC
EST: gi|15691882|gb|BI716203.1|BI716203
EST:     CCAGCCCCGCACAGCTACTGCTCATCCGCCGCAAGTTTGACCCCTTCAAG                         GACTCGTGGGCGCTGCCAGGTGGCTTTGTTGACGCCGGTGAGGGCCTGGAC
genomic: CCAGCCCCGCACAGCTACTGCTCATCCGCCGCAAGTTTGACCCCTTCAAGgtaagtagtt ... attctttcagGACTCGTGGGCGCTGCCAGGTGGCTTTGTTGACGCCGGTGAGGGCCTGGAC
EST: gi|16432100|gb|BI997326.1|BI997326
EST:     CCAGCCCCGCACAGCTACTGCTCATCCGCCGCAAGTTTGACCCCTTCAAG                         GACTCGTGGGCGCTGCCAGGTGGCTTTGTTGACGCCGGTGAGGGCCTGGAC
genomic: CCAGCCCCGCACAGCTACTGCTCATCCGCCGCAAGTTTGACCCCTTCAAGgtaagtagtt ... attctttcagGACTCGTGGGCGCTGCCAGGTGGCTTTGTTGACGCCGGTGAGGGCCTGGAC