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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtggccgcagcgctgggcagcggcaaaccgctgactttgcgaaatgaacgtcggttgcacccgcgccggggccgccggggtcgccggggcgacgtgagcgggctgggaccttgttgctcccaccaccttaacgtgtgtctatgtgctcacgtccctgcagACGGCCTCTCGCCGGTCCTTGAGTCTGCCGCAACACAGCTGGATGGGCCGTGGCAGACAGCGGAGTCGCGCGAGCCGCCGAAGCGAACGAAAGGCGGTGT

Basic information

species Chlamydomonas reinhardtii
transcript EDP04354
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23362361|gb|BU650165.1|BU650165
EST:     GCGCAGCTCGCTACGGCACCTGGCCAAGCAGCCGGCGGCGCANGCCATCG                         ACGGCCTCTCGCCGGTCCTTGAGT
genomic: GCGCAGCTCGCTACGGCACCTGGCCAAGCAGCCGGCGGCGCAGGCCATCGgtgagtggcc ... gtccctgcagACGGCCTCTCGCCGGTCCTTGAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaccttgttgctcccaccaccttaacgtgtgtctatgtgctcacgtccctgcagACGGCCTCTCGCCGGTCCTTGAGTCTGCCGCAACACAGCTGGATGGGCCGTGGCAGACAGCGGAGTCGCGCGAGCCGCCGAAGCGAACGAAAGGCGGTGT
                                      tgctcac  putative branch site (score: 2)
                                            cgtccct  CT-rich tract