1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...caaggatgcactctagcggatgctcagggggctccgtcgaaaaccgagcgagcctcttcgtgaccttgaatgcccacatcgcccgcctgcccacctgcagGACGACGCCAAGGACGCGCGCTGGTTCGACGTGTCGGCGCTGCCGCAGCTGGCCTTCGACCACAAGCTGGTGGTGCGCAGCTCGCTACGGCACCTGGCCA
species | Chlamydomonas reinhardtii |
transcript | EDP04354 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGCTTATGCGGCGCTGGTGCCCTCGACCGAGCTGGGAGTAAAGGCGGCG GACGACGCCAAGGACGCGCGCTGGTTCGACGTGTCGGCGCTGCCGCAGCTG
genomic: TTGCTTATGCGGCGCTGGTGCCCTCGACCGAGCTGGGAGTAAAGGCGGCGgtaagcgctg ... ccacctgcagGACGACGCCAAGGACGCGCGCTGGTTCGACGTGTCGGCGCTGCCGCAGCTG
gagcgagcctcttcgtgaccttgaatgcccacatcgcccgcctgcccacctgcagGACGACGCCAAGGACGCGCGCTGGTTCGACGTGTCGGCGCTGCCGCAGCTGGCCTTCGACCACAAGCTGGTGGTGCGCAGCTCGCTACGGCACCTGGCCA
cctgccc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaggatgcactctagcggatgctcagggggctccgtcgaaaaccgagcgagcctcttcgtgaccttgaatgcccacatcgcccgcctgcccacctgcagGACGACGCCAAGGACGCGCGCTGGTTCGACGTGTCGGCGCTGCCGCAGCTGGCCTTCGACCACAAGCTGGTGGTGCGCAGCTCGCTACGGCACCTGGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - -atgcact
- - - - - - - - - -atgctca
- - - - - - - - - - - - - - - - - - - - aaaccga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgccca