Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgcgggtgcggcaggcgcgcgggagcagcggcaaccggcctggggctggcaaacgtgctggggcttggggctgcaagcaattggcgtgcgtgggggcgcagatacagtgacaggttgccaaggcaggctgcgcgtaggccgtcctgcaggactgccaaggcactcacactcccgtcaacgcgcggcccaacagGTTGGGGCTTTCGGCGACCCTGGCCGCGACCCTCGTGGCTGGACCATCACCGTTGCTTATGCGGCGCTGGTGCCCTCGACCGAGCTGGGAGTAAAGGCGG

Basic information

species Chlamydomonas reinhardtii
transcript EDP04354
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23362361|gb|BU650165.1|BU650165
EST:     AGCTGCAGGAGGAGACGTCGGTGGACCCCGCGTCCGTGTCCATGACCCAG                         GTTGGGGCTTTCGGCGACCCTGGCCGCGACCCTCGTGGCTGGACCATCACC
genomic: AGCTGCAGGAGGAGACGTCGGTGGACCCCGCGTCCGTGTCCATGACCCAGgtgcgcgggt ... ggcccaacagGTTGGGGCTTTCGGCGACCCTGGCCGCGACCCTCGTGGCTGGACCATCACC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgtcctgcaggactgccaaggcactcacactcccgtcaacgcgcggcccaacagGTTGGGGCTTTCGGCGACCCTGGCCGCGACCCTCGTGGCTGGACCATCACCGTTGCTTATGCGGCGCTGGTGCCCTCGACCGAGCTGGGAGTAAAGGCGG
                      cactcac  putative branch site (score: 2)