1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCTTTACCTGCTGCCCACCACGGCGCTGACTCAGCAGTTCTGGGCCGTGGACGCGGCACGCACGGCCGAGCAGCTCGACGTGCTGGGCCGCTTCTTGCAGgtgccgggggaacgggctggggtagggcgaggaaggtgactagatggggcaacccattgcggcgagatgcggggcaggggcaaggtcaggggcgggagca...
species | Chlamydomonas reinhardtii |
transcript | EDP04339 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACGCGGCACGCACGGCCGAGCAGCTCGACGTGCTGGGCCGCTTCTTGCAG GGTGTGGGCCTGGCGGGTGGCGTGCTGGCCTTTATGGCCACCACTGACGGAEST: gi|23361035|gb|BU648855.1|BU648855
genomic: ACGCGGCACGCACGGCCGAGCAGCTCGACGTGCTGGGCCGCTTCTTGCAGgtgccggggg ... gtcccgccagGGTGTGGGCCTGGCGGGTGGCGTGCTGGCCTTTATGGCCACCACTGACGGA
EST: AGCTCGACGTGCTGGGCCGCTTCTTGCAG GGTGTGGGCCTGGCGGGTGGCGTGCTGGCCTTTATGGCCACCACTGACGGAEST: gi|14228368|gb|BG847184.1|BG847184
genomic: AGCTCGACGTGCTGGGCCGCTTCTTGCAGgtgccggggg ... gtcccgccagGGTGTGGGCCTGGCGGGTGGCGTGCTGGCCTTTATGGCCACCACTGACGGA
EST: ACGCGGCACGCACGGCCGAGCAGCTCNACGTGCTGGGCCGCTTCTTGCAG GGTGTGGGCCTGGCGGGTGGCGTGCTGGCCTTTATGGCCACCACTGACGGAEST: gi|23361036|gb|BU648856.1|BU648856
genomic: ACGCGGCACGCACGGCCGAGCAGCTCGACGTGCTGGGCCGCTTCTTGCAGgtgccggggg ... gtcccgccagGGTGTGGGCCTGGCGGGTGGCGTGCTGGCCTTTATGGCCACCACTGACGGA
EST: ACGCGGCACGCACGGCCGAGCAGCTCGACGTGCTGGGCCGCTTCTTGCAG GGTGTGGGCCTGGCGGGTGGCGTGCTGGCCTTTATGGCCACCACTGACGGAEST: gi|22063576|gb|BQ815302.1|BQ815302
genomic: ACGCGGCACGCACGGCCGAGCAGCTCGACGTGCTGGGCCGCTTCTTGCAGgtgccggggg ... gtcccgccagGGTGTGGGCCTGGCGGGTGGCGTGCTGGCCTTTATGGCCACCACTGACGGA
EST: ACGCGGCACGCACGGCCGAGCAGCTCGACGTGCTGGGCCGCTTCTTGCAG GGTGTGGGCCTGGCGGGTGGCGTGCTGGCCTTTATGGCCACCACTGACGGA
genomic: ACGCGGCACGCACGGCCGAGCAGCTCGACGTGCTGGGCCGCTTCTTGCAGgtgccggggg ... gtcccgccagGGTGTGGGCCTGGCGGGTGGCGTGCTGGCCTTTATGGCCACCACTGACGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTTACCTGCTGCCCACCACGGCGCTGACTCAGCAGTTCTGGGCCGTGGACGCGGCACGCACGGCCGAGCAGCTCGACGTGCTGGGCCGCTTCTTGCAGgtgccgggggaacgggctggggtagggcgaggaaggtgactagatggggcaacccattgcggcgagatgcggggcaggggcaaggtcaggggcgggagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacccat