Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtaagctgaccctctgcagctccgtcgcgcatcataaccgcatgccgcagcttggcagcgcgctgccaaaggggcagggccgtggcacaagagcactaggacacggttccggctcaagtaatctcactgtactcccccacatgtacatgcgactgcagGGCGGCTTCCTCATGGTCATGAACCACCACTTTGGCGGCTTCCTGCTG

Basic information

species Chlamydomonas reinhardtii
transcript EDP04339
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7687649|gb|AW758295.1|AW758295
EST:     GACAAACTGGCAGTGCTGCTGGCGGTCATGCAAGGCCTG                         GGCGGCTTCCTCATGGTCATGAACCACCACTTTGGCGGCTTCCTGCTG
genomic: GACAAACTGGCAGTGCTGCTGGCGGTCATGCAAGGCCTGgtgcgtaagc ... gcgactgcagGGCGGCTTCCTCATGGTCATGAACCACCACTTTGGCGGCTTCCTGCTG
EST: gi|23361036|gb|BU648856.1|BU648856
EST:     GACAAACTGGCAGTGCTGCTGGCGGTCATGCAAGGCCTG                         GGCGGCTTCCTCATGGTCATGAACCACCACTTTGGCGGCTTCCTGCTG
genomic: GACAAACTGGCAGTGCTGCTGGCGGTCATGCAAGGCCTGgtgcgtaagc ... gcgactgcagGGCGGCTTCCTCATGGTCATGAACCACCACTTTGGCGGCTTCCTGCTG
EST: gi|22063576|gb|BQ815302.1|BQ815302
EST:     GACAAACTGGCAGTGCTGCTGGCGGTCATGCAAGGCCTG                         GGCGGCTTCCTCATGGTCATGAACCACCACTTTGGCGGCTTCCTGCTG
genomic: GACAAACTGGCAGTGCTGCTGGCGGTCATGCAAGGCCTGgtgcgtaagc ... gcgactgcagGGCGGCTTCCTCATGGTCATGAACCACCACTTTGGCGGCTTCCTGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggttccggctcaagtaatctcactgtactcccccacatgtacatgcgactgcagGGCGGCTTCCTCATGGTCATGAACCACCACTTTGGCGGCTTCCTGCTG
                 atctcac  putative branch site (score: 3)
 aagtaat  TA-rich tract