1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tacataccataaagactttgacatccaggcttcgagtctggatggcaggccggtagatggagcctgctaagcagcgcgccgtttcgtactgtgcgtgcagACTCGTGAGCTGGCGGTTGGGCGTGCGGCTCCAACGGTAACGGCGCTGCGGCAACTGGGCGTCGAGCTGCCAGCCCAGTTCCCTGCG
species | Chlamydomonas reinhardtii |
transcript | EDP04339 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTTTCTGGTATCGTCGGCCACGACGTTCGTGCTGTTGAACAATGAAGAG ACTCGTGAGCTGGCGGTTGGGCGTGCGGCTCCAACGGTAACGGCGCTGCGGEST: gi|23361036|gb|BU648856.1|BU648856
genomic: CTTTTCTGGTATCGTCGGCCACGACGTTCGTGCTGTTGAACAATGAAGAGgtaaagtgtt ... gtgcgtgcagACTCGTGAGCTGGCGGTTGGGCGTGCGGCTCCAACGGTAACGGCGCTGCGG
EST: CTTTTCTGGTATCGTCGGCCACGACGTTCGTGCTGTTGAACAATGAAGAG ACTCGTGAGCTGGCGGTTGGGCGTGCGGCTCCAACGGTAACGGCGCTGCGGEST: gi|22063576|gb|BQ815302.1|BQ815302
genomic: CTTTTCTGGTATCGTCGGCCACGACGTTCGTGCTGTTGAACAATGAAGAGgtaaagtgtt ... gtgcgtgcagACTCGTGAGCTGGCGGTTGGGCGTGCGGCTCCAACGGTAACGGCGCTGCGG
EST: CTTTTCTGGTATCGTCGGCCACGACGTTCGTGCTGTTGAACAATGAAGAG ACTCGTGAGCTGGCGGTTGGGCGTGCGGCTCCAACGGTAACGGCGCTGCGG
genomic: CTTTTCTGGTATCGTCGGCCACGACGTTCGTGCTGTTGAACAATGAAGAGgtaaagtgtt ... gtgcgtgcagACTCGTGAGCTGGCGGTTGGGCGTGCGGCTCCAACGGTAACGGCGCTGCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacataccataaagactttgacatccaggcttcgagtctggatggcaggccggtagatggagcctgctaagcagcgcgccgtttcgtactgtgcgtgcagACTCGTGAGCTGGCGGTTGGGCGTGCGGCTCCAACGGTAACGGCGCTGCGGCAACTGGGCGTCGAGCTGCCAGCCCAGTTCCCTGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
-acatacc
- - - - ataaaga
- - - - - - - - - - acatcca