1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CCAAGTCGGGCGCGCCCCCGCCGCCGGCCATCGACATGGGCGCGCTGGCAGGCTTCCTGGGTGCCCTGGGACAGCCTGACGGCCGCGACTTGAAGAACCGgtgagtccgggattgggttgcttaggattcggtgggggcgacacgcctgttgcacatggtacgccctggtttagatgatcgctctaaccgggtggtaagc...
species | Chlamydomonas reinhardtii |
transcript | EDP04316 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGCTTCCTGGGTGCCCTGGGACAGCCTGACGGCCGCGACTTGAAGAACCG GGCGCTGCCGTTCAGCGAGCTGTGCGGCATGCTGAGCCAGCTGCTGGGTGGEST: gi|14242129|gb|BG860945.1|BG860945
genomic: GGCTTCCTGGGTGCCCTGGGACAGCCTGACGGCCGCGACTTGAAGAACCGgtgagtccgg ... cggcctgcagGGCGCTGCCGTTCAGCGAGCTGTGCGGCATGCTGAGCCAGCTGCTGGGTGG
EST: GGCTTCCTGGGTGCCCTGGGACAGCCTGACGGCCGCGACTTGAAGAACCG GGCGCTGCCGTTCAGCGAGCTGTGCGGCATGCTGAGCCAGCTGCTGGGTGGEST: gi|10127893|gb|BE726709.1|BE726709
genomic: GGCTTCCTGGGTGCCCTGGGACAGCCTGACGGCCGCGACTTGAAGAACCGgtgagtccgg ... cggcctgcagGGCGCTGCCGTTCAGCGAGCTGTGCGGCATGCTGAGCCAGCTGCTGGGTGG
EST: GGCTTCCTGGGTGCCCTGGGACAGCCTGACGGCCGCGACTTGAAGAACCG GGCGCTGCCGTTCAGCGAGCTGTGCGGCATGCTGAGCCAGCTGCTGGGTGG
genomic: GGCTTCCTGGGTGCCCTGGGACAGCCTGACGGCCGCGACTTGAAGAACCGgtgagtccgg ... cggcctgcagGGCGCTGCCGTTCAGCGAGCTGTGCGGCATGCTGAGCCAGCTGCTGGGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAAGTCGGGCGCGCCCCCGCCGCCGGCCATCGACATGGGCGCGCTGGCAGGCTTCCTGGGTGCCCTGGGACAGCCTGACGGCCGCGACTTGAAGAACCGgtgagtccgggattgggttgcttaggattcggtgggggcgacacgcctgttgcacatggtacgccctggtttagatgatcgctctaaccgggtggtaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcacat