1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAGATCCTCATCACCTACTATGGCTTTACGGACGCGGACCTGACCATTCTGATTGACACGGACAAGAGCTACCTGCAGCCCACTGGGAAGAACATCAAGgtatgtgcaggagatgaacatttctggctatcagataagtagctaggtggcgctgctgtcaggtggggcttgggcggaatcatgctgcgctctggtttgc...
species | Chlamydomonas reinhardtii |
transcript | EDP04316 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGATTGACACGGACAAGAGCTACCTGCAGCCCACTGGGAAGAACATCAAG GCCAAGATCACGGAGATGGTGAGCGCCGCCCAGGACEST: gi|8576465|gb|BE129006.1|BE129006
genomic: TGATTGACACGGACAAGAGCTACCTGCAGCCCACTGGGAAGAACATCAAGgtatgtgcag ... tgcctaacagGCCAAGATCACGGAGATGGTGAGCGCCGCCCAGGAC
EST: TGATTGACACGGACAAGAGCTACCTGCAGCCCACTGGGAAGAACATCAAG GCCAAGATCACGGAGATGGTGAGCGCCGCCCAGGACGGNGATGTGCTGTTCEST: gi|15697523|gb|BI721828.1|BI721828
genomic: TGATTGACACGGACAAGAGCTACCTGCAGCCCACTGGGAAGAACATCAAGgtatgtgcag ... tgcctaacagGCCAAGATCACGGAGATGGTGAGCGCCGCCCAGGACGGGGATGTGCTGTTC
EST: TGATTGACACGGACAAGAGCTACCTGCAGCCCACTGGGAAGAACATCAAG GCCAAGATCACGGAGATGGTGAGCGCCGCCCAGGACGGGGATGTGCTGTTCEST: gi|14242129|gb|BG860945.1|BG860945
genomic: TGATTGACACGGACAAGAGCTACCTGCAGCCCACTGGGAAGAACATCAAGgtatgtgcag ... tgcctaacagGCCAAGATCACGGAGATGGTGAGCGCCGCCCAGGACGGGGATGTGCTGTTC
EST: TGATTGACACGGACAAGAGCTACCTGCAGCCCACTGGGAAGAACATCAAG GCCAAGATCACGGAGATGGTGAGCGCCGCCCAGGACGGGGATGTGCTGTTCEST: gi|10793125|gb|AV630491.1|AV630491
genomic: TGATTGACACGGACAAGAGCTACCTGCAGCCCACTGGGAAGAACATCAAGgtatgtgcag ... tgcctaacagGCCAAGATCACGGAGATGGTGAGCGCCGCCCAGGACGGGGATGTGCTGTTC
EST: TGATTGACACGGACAAGAGCTACCTGCAGCCCACTGGGAAGAACATCAAG GCCAAGATCACGGAGATGGTGAGCGCCGCCCAGGACGGNGATGTGCTEST: gi|15702006|gb|BI726311.1|BI726311
genomic: TGATTGACACGGACAAGAGCTACCTGCAGCCCACTGGGAAGAACATCAAGgtatgtgcag ... tgcctaacagGCCAAGATCACGGAGATGGTGAGCGCCGCCCAGGACGGGGATGTGCT
EST: TGATTGACACGGACAAGAGCTACCTGCAGCCCACTGGGAAGAACATCAAG GCCAAGATCACGGAGATGGTGAGCGCCGCCCAGGACGGGGATGTGCTGTTCEST: gi|10127893|gb|BE726709.1|BE726709
genomic: TGATTGACACGGACAAGAGCTACCTGCAGCCCACTGGGAAGAACATCAAGgtatgtgcag ... tgcctaacagGCCAAGATCACGGAGATGGTGAGCGCCGCCCAGGACGGGGATGTGCTGTTC
EST: TGATTGACACGGACAAGAGCTACCTGCAGCCCACTGGGAAGAACATCAAG GCCAAGATCACGGAGATGGTGAGCGCCGCCCAGGACGGGGATGTGCTGTTCEST: gi|15697101|gb|BI721406.1|BI721406
genomic: TGATTGACACGGACAAGAGCTACCTGCAGCCCACTGGGAAGAACATCAAGgtatgtgcag ... tgcctaacagGCCAAGATCACGGAGATGGTGAGCGCCGCCCAGGACGGGGATGTGCTGTTC
EST: TGATTGACACGGACAAGAGCTACCTGCAGCCCACTGGGAAGAACATCAAG GCCAAGATCACGGAGATGGTGAGCGCCGCCCAGGACGGNGATGTGCTGTTCEST: gi|15700510|gb|BI724799.1|BI724799
genomic: TGATTGACACGGACAAGAGCTACCTGCAGCCCACTGGGAAGAACATCAAGgtatgtgcag ... tgcctaacagGCCAAGATCACGGAGATGGTGAGCGCCGCCCAGGACGGGGATGTGCTGTTC
EST: TGATTGACACGGACAAGAGCTACCTGCAGCCCACTGGGAAGAACATCAAG GCCAAGATCACGGAGATGGTGAGCGCCGCCCAGGAGGGGGATGTGCTGTTCEST: gi|9210393|gb|BE337308.1|BE337308
genomic: TGATTGACACGGACAAGAGCTACCTGCAGCCCACTGGGAAGAACATCAAGgtatgtgcag ... tgcctaacagGCCAAGATCACGGAGATGGTGAGCGCCGCCCAGGACGGGGATGTGCTGTTC
EST: TGATTGACACGGACAAGAGCTACCTGCAGCCCACTGGGAAGAACATCAAG GCCAAGATCACGGAGATGGTGAGCGCCGCCCAGGACGGGGATGTGCTGTTCEST: gi|15698301|gb|BI722606.1|BI722606
genomic: TGATTGACACGGACAAGAGCTACCTGCAGCCCACTGGGAAGAACATCAAGgtatgtgcag ... tgcctaacagGCCAAGATCACGGAGATGGTGAGCGCCGCCCAGGACGGGGATGTGCTGTTC
EST: TGATTGACACGGACAAGAGCTACCTGCAGCCCACTGGGAAGAACATCAAG GCCAAGATCACGGAGATGGTGAGCGCCGCCCAGGACGGGGATGTGCTGTTCEST: gi|16433037|gb|BI998263.1|BI998263
genomic: TGATTGACACGGACAAGAGCTACCTGCAGCCCACTGGGAAGAACATCAAGgtatgtgcag ... tgcctaacagGCCAAGATCACGGAGATGGTGAGCGCCGCCCAGGACGGGGATGTGCTGTTC
EST: TGATTGACACGGACAAGAGCTACCTGCAGCCCACTGGGAAGAACATCAAG GCCAAGATCACGGAGATGGTGAGCGCCGCCCAGGACGGGGATGTGCTGTTC
genomic: TGATTGACACGGACAAGAGCTACCTGCAGCCCACTGGGAAGAACATCAAGgtatgtgcag ... tgcctaacagGCCAAGATCACGGAGATGGTGAGCGCCGCCCAGGACGGGGATGTGCTGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGATCCTCATCACCTACTATGGCTTTACGGACGCGGACCTGACCATTCTGATTGACACGGACAAGAGCTACCTGCAGCCCACTGGGAAGAACATCAAGgtatgtgcaggagatgaacatttctggctatcagataagtagctaggtggcgctgctgtcaggtggggcttgggcggaatcatgctgcgctctggtttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctggtt