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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcggcagccgatggccgacttcacaccaccggctggccgcagttgcggcgagacgtcgcgatatgacccgctcccggtttcgtgctcttacgaactccggtcttgctcgcagGGACCAACGCGGCCCTGCGTGGATGCATCAACGATGTGTGGGGAATGAAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP04316
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10789821|gb|AV627186.1|AV627186
EST:     TCCAGCCATGCCGGGCAAGAAGGCTGTCCTCATCGGTTGTAACTATCCAG                         GGACCAACGCGGCCCTGCGTGGATGCATCAACGATGTGTGGGGAATGAAG
genomic: TCCAGCCATGCCGGGCAAGAAGGCTGTCCTCATCGGTTGTAACTATCCAGgtgcggcagc ... ttgctcgcagGGACCAACGCGGCCCTGCGTGGATGCATCAACGATGTGTGGGGAATGAAG
EST: gi|8576465|gb|BE129006.1|BE129006
EST:     TCCAGCCATGCCGGGCAAGAAGGCTGTCCTCATCGGTTGTAACTATCCAG                         GGACCAACGCGGCCCTGCGTGGATGCATCAACGATGTGTGGGGAATGAAG
genomic: TCCAGCCATGCCGGGCAAGAAGGCTGTCCTCATCGGTTGTAACTATCCAGgtgcggcagc ... ttgctcgcagGGACCAACGCGGCCCTGCGTGGATGCATCAACGATGTGTGGGGAATGAAG
EST: gi|15697523|gb|BI721828.1|BI721828
EST:     TCCAGCCATGCCGGGCAAGAAGGCTGTCCTCATCGGTTGTAACTATCCAG                         GGACCAACGCGGCCCTGCGTGGATGCATCAACGATGTGTGGGGAATGAAG
genomic: TCCAGCCATGCCGGGCAAGAAGGCTGTCCTCATCGGTTGTAACTATCCAGgtgcggcagc ... ttgctcgcagGGACCAACGCGGCCCTGCGTGGATGCATCAACGATGTGTGGGGAATGAAG
EST: gi|10793125|gb|AV630491.1|AV630491
EST:     TCCAGCCATGCCGGGCAAGAAGGCTGTCCTCATCGGTTGTAACTATCCAG                         GGACCAACGCGGCCCTGCGTGGATGCATCAACGATGTGTGGGGAATGAAG
genomic: TCCAGCCATGCCGGGCAAGAAGGCTGTCCTCATCGGTTGTAACTATCCAGgtgcggcagc ... ttgctcgcagGGACCAACGCGGCCCTGCGTGGATGCATCAACGATGTGTGGGGAATGAAG
EST: gi|15702006|gb|BI726311.1|BI726311
EST:     TCCAGCCATGCCGGGCAAGAAGGCTGTCCTCATCGGTTGTAACTATCCAG                         GGACCAACGCGGCCCTGCGTGGATGCATCAACGATGTGTGGGGAATGAAG
genomic: TCCAGCCATGCCGGGCAAGAAGGCTGTCCTCATCGGTTGTAACTATCCAGgtgcggcagc ... ttgctcgcagGGACCAACGCGGCCCTGCGTGGATGCATCAACGATGTGTGGGGAATGAAG
EST: gi|15697101|gb|BI721406.1|BI721406
EST:     TCCAGCCATGCCGGGCAAGAAGGCTGTCCTCATCGGTTGTAACTATCCAG                         GGACCAACGCGGCCCTGCGTGGATGCATCAACGATGTGTGGGGAATGAAG
genomic: TCCAGCCATGCCGGGCAAGAAGGCTGTCCTCATCGGTTGTAACTATCCAGgtgcggcagc ... ttgctcgcagGGACCAACGCGGCCCTGCGTGGATGCATCAACGATGTGTGGGGAATGAAG
EST: gi|15700510|gb|BI724799.1|BI724799
EST:     TCCAGCCATGCCGGGCAAGAAGGCTGTCCTCATCGGTTGTAACTATCCAG                         GGACCAACGCGGCCCTGCGTGGATGCATCAACGATGTGTGGGGAATGAAAG
genomic: TCCAGCCATGCCGGGCAAGAAGGCTGTCCTCATCGGTTGTAACTATCCAGgtgcggcagc ... ttgctcgcagGGACCAACGCGGCCCTGCGTGGATGCATCAACGATGTGTGGGGAATGAA-G
EST: gi|9210393|gb|BE337308.1|BE337308
EST:     TCCAGCCATGCCGGGCAAGAAGGCTGTCCTCATCGGTTGTAACTATCCAG                         GGACCAACGCGGCCCTGCGTGGATGCATCAACGATGTGTGGGGAATGAAG
genomic: TCCAGCCATGCCGGGCAAGAAGGCTGTCCTCATCGGTTGTAACTATCCAGgtgcggcagc ... ttgctcgcagGGACCAACGCGGCCCTGCGTGGATGCATCAACGATGTGTGGGGAATGAAG
EST: gi|15698301|gb|BI722606.1|BI722606
EST:     TCCAGCCATGCCGGGCAAGAAGGCTGTCCTCATCGGTTGTAACTATCCAG                         GGACCAACGCGGCCCTGCGTGGATGCATCAACGATGTGTGGGGAATGAAG
genomic: TCCAGCCATGCCGGGCAAGAAGGCTGTCCTCATCGGTTGTAACTATCCAGgtgcggcagc ... ttgctcgcagGGACCAACGCGGCCCTGCGTGGATGCATCAACGATGTGTGGGGAATGAAG
EST: gi|16433037|gb|BI998263.1|BI998263
EST:     TCCAGCCATGCCGGGCAAGAAGGCTGTCCTCATCGGTTGTAACTATCCAG                         GGACCAACGCGGCCCTGCGTGGATGCATCAACGATGTGTGGGGAATGAAG
genomic: TCCAGCCATGCCGGGCAAGAAGGCTGTCCTCATCGGTTGTAACTATCCAGgtgcggcagc ... ttgctcgcagGGACCAACGCGGCCCTGCGTGGATGCATCAACGATGTGTGGGGAATGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgatatgacccgctcccggtttcgtgctcttacgaactccggtcttgctcgcagGGACCAACGCGGCCCTGCGTGGATGCATCAACGATGTGTGGGGAATGAAG
                           ctcttac  putative branch site (score: 3)
                                           tcttgctc  putative PPT