1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cagttgtggtggctgtgggcgatgttggggctctcgggtctaggtgccacgtgctgtatgctgatgattgaattacacgtgtgtccggtgcgtaccgcagTTCAACTTGACGGCGATTGAGCCTGTGCCCCTCGGGACCGGCAGCAGCGGCAGCGGCACCGGAGCGAGCTTATGATCAACAACGCATGAAAGCTCCCTGT
species | Chlamydomonas reinhardtii |
transcript | EDP03812 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AACACCTACGCG TTCAACTTGACGGCGATTGAGCCTGTGCCCCTCGGGACCGGCAGCAACGGCEST: gi|15702848|gb|BI727153.1|BI727153
genomic: AACACCTACGCGgtgggtggcg ... cgtaccgcagTTCAACTTGACGGCGATTGAGCCTGTGCCCCTCGGGACCGGCAGCAGCGGC
EST: GCAACACCCACGACAACATCACCACACGCTGGCTGGACAACACCTACGCG TTCAACTTGACGGCGATTGAGCCTGTGCCCCTCGGGACCGGCAGCAGCGGC
genomic: GCAACACCCACGACAACATCACCACACGCTGGCTGGACAACACCTACGCGgtgggtggcg ... cgtaccgcagTTCAACTTGACGGCGATTGAGCCTGTGCCCCTCGGGACCGGCAGCAGCGGC
gccacgtgctgtatgctgatgattgaattacacgtgtgtccggtgcgtaccgcagTTCAACTTGACGGCGATTGAGCCTGTGCCCCTCGGGACCGGCAGCAGCGGCAGCGGCACCGGAGCGAGCTTATGATCAACAACGCATGAAAGCTCCCTGT
tgctgat putative branch site (score: 3)
attgaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagttgtggtggctgtgggcgatgttggggctctcgggtctaggtgccacgtgctgtatgctgatgattgaattacacgtgtgtccggtgcgtaccgcagTTCAACTTGACGGCGATTGAGCCTGTGCCCCTCGGGACCGGCAGCAGCGGCAGCGGCACCGGAGCGAGCTTATGATCAACAACGCATGAAAGCTCCCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- -ttgtggt
- - - - - - - - - - -atgttgg
- - - - - - - - - - - - - - - - - - - - - - - -cacgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgtatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aattaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtgtgt