1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...acatcttggcgtgcacgccttcaccacgtgccctcacctgctgcctgctgcccctctctgtcgtgccctgcactcttgtgctgtgtgtccgccgccgcagGTCGAGGACCTGTCCGCTGAACCCAACTACCCCTTCGAGCCCTTCCACAGCAACACCCACGACAACATCACCACACGCTGGCTGGACAACACCTACGCG
species | Chlamydomonas reinhardtii |
transcript | EDP03812 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTACTGCCGACCACTCAGAGTGNNGGCAGAGCCACACCGTGTGGGGAGAG GTCGAGGACCTGTCCGC
genomic: CTACTGCCGACCACTCAGAGTGGGGGCAGAGCCACACCGTGTGGGGAGAGgtatgcgctt ... gccgccgcagGTCGAGGACCTGTCCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatcttggcgtgcacgccttcaccacgtgccctcacctgctgcctgctgcccctctctgtcgtgccctgcactcttgtgctgtgtgtccgccgccgcagGTCGAGGACCTGTCCGCTGAACCCAACTACCCCTTCGAGCCCTTCCACAGCAACACCCACGACAACATCACCACACGCTGGCTGGACAACACCTACGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - -cgtgcac
- - - - - - - - - - - - - - - ccctcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgt