1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctccaaaccgcccctacaggcctgaacctggggcccaacccttccaacctcccgcctctcgccctgtgaatgcatatgcgtgtctgtgtgtcctggacagGAGTGGGGCAACAACGGCTTCTTCGGTCCACCCTACGCGCTGCTGCAGGGCAGCCTGGCGGACCTGGCGCGCCAGCCGCCCTTTGAGAACAAGGGCACAA
species | Chlamydomonas reinhardtii |
transcript | EDP03812 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTACCGCCACGAGCCAGTGCCTATG GAGTGGGGCAACAACGGCTTCTTCGGTCCACCCTACGCGCTGCTGCAGGGCEST: gi|15692802|gb|BI717107.1|BI717107
genomic: CTACCGCCACGAGCCAGTGCCTATGgtatgtgccg ... tcctggacagGAGTGGGGCAACAACGGCTTCTTCGGTCCACCCTACGCGCTGCTGCAGGGC
EST: CTACCGCCACGAGCCAGTGCCTATG GAGTGGGGCAACAACGGCTTCTTCGGTCCACCCTACGCGCTGCTGCAGGGC
genomic: CTACCGCCACGAGCCAGTGCCTATGgtatgtgccg ... tcctggacagGAGTGGGGCAACAACGGCTTCTTCGGTCCACCCTACGCGCTGCTGCAGGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctccaaaccgcccctacaggcctgaacctggggcccaacccttccaacctcccgcctctcgccctgtgaatgcatatgcgtgtctgtgtgtcctggacagGAGTGGGGCAACAACGGCTTCTTCGGTCCACCCTACGCGCTGCTGCAGGGCAGCCTGGCGGACCTGGCGCGCCAGCCGCCCTTTGAGAACAAGGGCACAA
-tccaaac
- - - - - - - - - - - - - - - - -cccaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtgtg