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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCGTGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttggtggattagaccgaaaccacacggtgagcttggtggattagaccgagggtagctaggatgtgtggccgcggacaggccctgagcttcactt...

Basic information

species Chlamydomonas reinhardtii
transcript EDP02802
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6550689|gb|AV396473.1|AV396473
EST:     TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG                         TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCG--AC
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: gi|9460789|gb|BE453411.1|BE453411
EST:     TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG                         TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: gi|10191416|gb|BE761492.1|BE761492
EST:     TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG                         TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: gi|9458857|gb|BE452560.1|BE452560
EST:     TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG                         TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: gi|10126706|gb|BE725426.1|BE725426
EST:     TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG                         TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: gi|16073612|gb|BI875608.1|BI875608
EST:     TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG                         TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: gi|15372999|gb|BI532425.1|BI532425
EST:     TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG                         TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: gi|8514065|gb|BE121960.1|BE121960
EST:     TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG                         TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: gi|23363379|gb|BU651199.1|BU651199
EST:     TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG                         TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: gi|15367732|gb|BI527158.1|BI527158
EST:     TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG                         TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: gi|10127455|gb|BE726159.1|BE726159
EST:     TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG                         TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: gi|6551092|gb|AV396876.1|AV396876
EST:     TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG                         TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: gi|49459176|gb|BP087089.1|BP087089
EST:     TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG                         TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: gi|9441107|gb|BE441602.1|BE441602
EST:     TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG                         TACATGTACAACTTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: gi|15697868|gb|BI722173.1|BI722173
EST:     TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG                         TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: gi|23363008|gb|BU650828.1|BU650828
EST:     TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG                         TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: gi|22068213|gb|BQ818152.1|BQ818152
EST:     TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG                         TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: gi|22069911|gb|BQ819388.1|BQ819388
EST:     TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG                         TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: gi|15694693|gb|BI718998.1|BI718998
EST:     TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG                         TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCGTGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttggtggattagaccgaaaccacacggtgagcttggtggattagaccgagggtagctaggatgtgtggccgcggacaggccctgagcttcactt

- - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgagctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtggat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgg