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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTCCTCTCGTACATGTGGGAGAAGAACAATGACGACTCTGCTTCCTACAAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGAgtaagcggggcttctggggcacatggaggcatacagagctggttttaggctgcagggcaccggccaggactcgactgggagagcgacccgacctgcttgtccccgcctgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP02802
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6550689|gb|AV396473.1|AV396473
EST:     AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGA                         TCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
genomic: AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGAgtaagcgggg ... ccgcctgcagTCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
EST: gi|9460789|gb|BE453411.1|BE453411
EST:     AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGA                         TCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
genomic: AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGAgtaagcgggg ... ccgcctgcagTCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
EST: gi|10191416|gb|BE761492.1|BE761492
EST:     AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGA                         TCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
genomic: AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGAgtaagcgggg ... ccgcctgcagTCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
EST: gi|9458857|gb|BE452560.1|BE452560
EST:     AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGA                         TCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
genomic: AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGAgtaagcgggg ... ccgcctgcagTCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
EST: gi|10126706|gb|BE725426.1|BE725426
EST:     AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGA                         TCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
genomic: AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGAgtaagcgggg ... ccgcctgcagTCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
EST: gi|16073612|gb|BI875608.1|BI875608
EST:     AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGA                         TCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
genomic: AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGAgtaagcgggg ... ccgcctgcagTCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
EST: gi|15372999|gb|BI532425.1|BI532425
EST:     AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGA                         TCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
genomic: AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGAgtaagcgggg ... ccgcctgcagTCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
EST: gi|8514065|gb|BE121960.1|BE121960
EST:     AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGA                         TCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
genomic: AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGAgtaagcgggg ... ccgcctgcagTCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
EST: gi|23363379|gb|BU651199.1|BU651199
EST:     AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGA                         TCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
genomic: AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGAgtaagcgggg ... ccgcctgcagTCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
EST: gi|15367732|gb|BI527158.1|BI527158
EST:     AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGA                         TCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
genomic: AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGAgtaagcgggg ... ccgcctgcagTCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
EST: gi|10127455|gb|BE726159.1|BE726159
EST:     AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGA                         TCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
genomic: AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGAgtaagcgggg ... ccgcctgcagTCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
EST: gi|49462815|gb|BP090728.1|BP090728
EST:     AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGA                         TCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
genomic: AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGAgtaagcgggg ... ccgcctgcagTCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
EST: gi|6551092|gb|AV396876.1|AV396876
EST:     AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGA                         TCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
genomic: AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGAgtaagcgggg ... ccgcctgcagTCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
EST: gi|49459176|gb|BP087089.1|BP087089
EST:     AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGA                         TCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
genomic: AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGAgtaagcgggg ... ccgcctgcagTCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
EST: gi|9441107|gb|BE441602.1|BE441602
EST:     AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGA                         TCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
genomic: AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGAgtaagcgggg ... ccgcctgcagTCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
EST: gi|15697868|gb|BI722173.1|BI722173
EST:     AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGA                         TCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
genomic: AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGAgtaagcgggg ... ccgcctgcagTCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
EST: gi|23363008|gb|BU650828.1|BU650828
EST:     AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGA                         TCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
genomic: AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGAgtaagcgggg ... ccgcctgcagTCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
EST: gi|22068213|gb|BQ818152.1|BQ818152
EST:     AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGA                         TCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
genomic: AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGAgtaagcgggg ... ccgcctgcagTCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
EST: gi|22069911|gb|BQ819388.1|BQ819388
EST:     AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGA                         TCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
genomic: AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGAgtaagcgggg ... ccgcctgcagTCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
EST: gi|15694693|gb|BI718998.1|BI718998
EST:     AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGA                         TCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA
genomic: AAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGAgtaagcgggg ... ccgcctgcagTCGCATCATCGCGTGGCGCGAGCGGACCATGTATGACGATTACGCTGCAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTTCCTCTCGTACATGTGGGAGAAGAACAATGACGACTCTGCTTCCTACAAGGAGTGGCAGGACTTCCTTGATGTCGCCGAGAAGGACCGCCGGCGCGAgtaagcggggcttctggggcacatggaggcatacagagctggttttaggctgcagggcaccggccaggactcgactgggagagcgacccgacctgcttgtccccgcctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG