1 5' 3' | 2 5' 3' | 3 5' 3' |
...ccgcacccttgccaccgcaccaacacctaggcggtcctgctctgccgcatgaatgcccgcgcctgctcctctgccccctcctctctgctcctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGACCCCTCGGAGCTCCAGGCGGCGGCCACCTCTGTTGAGGCGCGCGTCAAGT
species | Chlamydomonas reinhardtii |
transcript | EDP02802 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCG--ACEST: gi|9460789|gb|BE453411.1|BE453411
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGACEST: gi|10191416|gb|BE761492.1|BE761492
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGACEST: gi|9458857|gb|BE452560.1|BE452560
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGACEST: gi|10126706|gb|BE725426.1|BE725426
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGACEST: gi|16073612|gb|BI875608.1|BI875608
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGACEST: gi|15372999|gb|BI532425.1|BI532425
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGACEST: gi|8514065|gb|BE121960.1|BE121960
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGACEST: gi|23363379|gb|BU651199.1|BU651199
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGACEST: gi|15367732|gb|BI527158.1|BI527158
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGACEST: gi|10127455|gb|BE726159.1|BE726159
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGACEST: gi|6551092|gb|AV396876.1|AV396876
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGACEST: gi|49459176|gb|BP087089.1|BP087089
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGACEST: gi|9441107|gb|BE441602.1|BE441602
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG TACATGTACAACTTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGACEST: gi|15697868|gb|BI722173.1|BI722173
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGACEST: gi|23363008|gb|BU650828.1|BU650828
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGACEST: gi|22068213|gb|BQ818152.1|BQ818152
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGACEST: gi|22069911|gb|BQ819388.1|BQ819388
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGACEST: gi|15694693|gb|BI718998.1|BI718998
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
EST: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACG TACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
genomic: TGTGGCGCGAGGTGGACCCCACCGGCCAGGCCAAGAACCGCAACCACACGgtgagcttgg ... ctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGAC
cgcatgaatgcccgcgcctgctcctctgccccctcctctctgctcctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGACCCCTCGGAGCTCCAGGCGGCGGCCACCTCTGTTGAGGCGCGCGTCAAGT
cccgcgcctgctcctc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccgcacccttgccaccgcaccaacacctaggcggtcctgctctgccgcatgaatgcccgcgcctgctcctctgccccctcctctctgctcctccccgcagTACATGTACAACCTGAAGACGTTTGGGCACCGCAGCTACACCCGGCGCGACCCCTCGGAGCTCCAGGCGGCGGCCACCTCTGTTGAGGCGCGCGTCAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
-cgcaccc
- - - - - - - - - accaaca
- - - - - - - - - - - - - - - - - - - - - - - - atgaatg