1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCGGCCAACAACGCCATCGCGGAGGGCAAGGCGCCGTCGCGCTGGGCTGGCAGCCGCGTGGTGGCGCAGCTGGAGCCGGCGGGCGACTACTACATCGCGGgtgaggcgtggggtgggtgggtttgcggcttggttaggtgatgtgactgctgtgataggttggatttggggcgaaaggcggtgggggcttgctgcgtgag...
species | Chlamydomonas reinhardtii |
transcript | EDP02777 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAACCGCGTGGTGGCGCAGCTGGAGCCGGCGGGCGACTACTACATCGCGG AGGACTACCACCAGCAGTACCTGTCCAAGGGTGGGCGCTTCGGCCAGGCGCEST: gi|15368537|gb|BI527963.1|BI527963
genomic: CAGCCGCGTGGTGGCGCAGCTGGAGCCGGCGGGCGACTACTACATCGCGGgtgaggcgtg ... ctgcctgcagAGGACTACCACCAGCAGTACCTGTCCAAGGGTGGGCGCTTCGGCCAGGCGC
EST: GTGGCGCAGCTGGAGCCGGCGGGCGACTACTACATCGCGG AGGACTACCACCAGCAGTACCTGTCCAAGGGTGGGCGCTTCGGCCAGGCGC
genomic: GTGGCGCAGCTGGAGCCGGCGGGCGACTACTACATCGCGGgtgaggcgtg ... ctgcctgcagAGGACTACCACCAGCAGTACCTGTCCAAGGGTGGGCGCTTCGGCCAGGCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGGCCAACAACGCCATCGCGGAGGGCAAGGCGCCGTCGCGCTGGGCTGGCAGCCGCGTGGTGGCGCAGCTGGAGCCGGCGGGCGACTACTACATCGCGGgtgaggcgtggggtgggtgggtttgcggcttggttaggtgatgtgactgctgtgataggttggatttggggcgaaaggcggtgggggcttgctgcgtgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taggtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgtga