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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acggacggctgctagacagggcatttacagacacggcttgtgcagagctgtattcagccttaaaactcagcgatgcccgcccccgcccctctgcctgcagAGGACTACCACCAGCAGTACCTGTCCAAGGGTGGGCGCTTCGGCCAGGCGCAATCAGCGGCCAAGGGCTGCAACGACCCCATCCGCTGCTACGGCTGAGC

Basic information

species Chlamydomonas reinhardtii
transcript EDP02777
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22074489|gb|BQ823480.1|BQ823480
EST:     CAACCGCGTGGTGGCGCAGCTGGAGCCGGCGGGCGACTACTACATCGCGG                         AGGACTACCACCAGCAGTACCTGTCCAAGGGTGGGCGCTTCGGCCAGGCGC
genomic: CAGCCGCGTGGTGGCGCAGCTGGAGCCGGCGGGCGACTACTACATCGCGGgtgaggcgtg ... ctgcctgcagAGGACTACCACCAGCAGTACCTGTCCAAGGGTGGGCGCTTCGGCCAGGCGC
EST: gi|15368537|gb|BI527963.1|BI527963
EST:     GTGGCGCAGCTGGAGCCGGCGGGCGACTACTACATCGCGG                         AGGACTACCACCAGCAGTACCTGTCCAAGGGTGGGCGCTTCGGCCAGGCGC
genomic: GTGGCGCAGCTGGAGCCGGCGGGCGACTACTACATCGCGGgtgaggcgtg ... ctgcctgcagAGGACTACCACCAGCAGTACCTGTCCAAGGGTGGGCGCTTCGGCCAGGCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctgtattcagccttaaaactcagcgatgcccgcccccgcccctctgcctgcagAGGACTACCACCAGCAGTACCTGTCCAAGGGTGGGCGCTTCGGCCAGGCGCAATCAGCGGCCAAGGGCTGCAACGACCCCATCCGCTGCTACGGCTGAGC
                              cccgcccccgcccctc  CT-rich tract
              ttaaaact  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
acggacggctgctagacagggcatttacagacacggcttgtgcagagctgtattcagccttaaaactcagcgatgcccgcccccgcccctctgcctgcagAGGACTACCACCAGCAGTACCTGTCCAAGGGTGGGCGCTTCGGCCAGGCGCAATCAGCGGCCAAGGGCTGCAACGACCCCATCCGCTGCTACGGCTGAGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - -agacagg
- - - - - - - - - - - - - acagaca
- - - - - - - - - - - - - - - - - - -ttgtgca
- - - - - - - - - - - - - - - - - - - - - - - - tgtattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaactca