1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gcatgaacagctctttctgaatgccaagctgggtgctctgcatgacagcccaatgtcgctgatgtcgccccctctccccacacgccggatttgttcgcagACTCCCTACTGGACACGTTCTTCGCACGTGTGGATCCAACCACCCTCAACCGCCAGGGCAACGACCGCGGCACGCAG
species | Chlamydomonas reinhardtii |
transcript | EDP02777 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCATGCTGAGGCCATCCAGTGCACCTACGACCCCAAGCAATGCAGCTACG ACTGCCCTACTGGACACGTTCTTCGCACGTGTGGATCCAACGACCCTCAAAEST: gi|10774207|gb|AV625030.1|AV625030
genomic: GCATGCTGAGGCCATCCAGTGCACCTACGACCCCAAGCAATGCAGCTACGgtacggcagg ... ttgttcgcagACT-CCCTACTGGACACGTTCTTCGCACGTGTGGATCCAACCACCCTCAAC
EST: GCATGCTGAGGCCATCCAGTGCACCTACGACCCCAAGCAATGCAGCTACG ACTCCCTACTGGACACGTTCTTCGCACGTEST: gi|10768141|gb|AV618966.1|AV618966
genomic: GCATGCTGAGGCCATCCAGTGCACCTACGACCCCAAGCAATGCAGCTACGgtacggcagg ... ttgttcgcagACTCCCTACTGGACACGTTCTTCGCACGT
EST: GCATGCTGAGGCCATCCAGTGCACCTACGACCCCAAGCAATGCAGCTACG ACTCCCTACTGGACACGTTCTTCGCACGTGTGGATCCAACCACCCTCAACC
genomic: GCATGCTGAGGCCATCCAGTGCACCTACGACCCCAAGCAATGCAGCTACGgtacggcagg ... ttgttcgcagACTCCCTACTGGACACGTTCTTCGCACGTGTGGATCCAACCACCCTCAACC
cagcccaatgtcgctgatgtcgccccctctccccacacgccggatttgttcgcagACTCCCTACTGGACACGTTCTTCGCACGTGTGGATCCAACCACCCTCAACCGCCAGGGCAACGACCGCGGCACGCAG
cgctgat putative branch site (score: 4)
tttgttc putative PPT
atttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatgaacagctctttctgaatgccaagctgggtgctctgcatgacagcccaatgtcgctgatgtcgccccctctccccacacgccggatttgttcgcagACTCCCTACTGGACACGTTCTTCGCACGTGTGGATCCAACCACCCTCAACCGCCAGGGCAACGACCGCGGCACGCAG
- atgaaca
- - - - - - - - ctgaatg
- - - - - - - - - - - - - - - - - - -ctgcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacgcc