1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCTGCCGACCTGGACAAGGTGGCGGCGCGCTTCACGGTGTGTCGTGAGCTGCTGCCCAAGCTGAGCAGGGGCGAGCCGGAGCTGGCGGAGATGGATGAGgtgtgtgaggcgtgtgtgtgtatgtgtgtgtgtgtgcattgtcgtgtgcgtgtcgtgtgcatgcgtgggggaggggtgaaactgcgtgcgttggccacgg...
species | Chlamydomonas reinhardtii |
transcript | EDP02681 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGCTGCCCAAGCTGAGCAGGGGCGAGCCGGAGCTGGCGGAGATGGATGAG CCCGEST: gi|10772353|gb|AV623176.1|AV623176
genomic: TGCTGCCCAAGCTGAGCAGGGGCGAGCCGGAGCTGGCGGAGATGGATGAGgtgtgtgagg ... gcacctgcagCCCG
EST: TGCTGCCCAAGCTGAGCAGGGGCGAGCCGGAGCTGGCGGAGATGGATGAG CCCGEST: gi|10127998|gb|BE726814.1|BE726814
genomic: TGCTGCCCAAGCTGAGCAGGGGCGAGCCGGAGCTGGCGGAGATGGATGAGgtgtgtgagg ... gcacctgcagCCCG
EST: TGCTGCCCAAGCTGAGCAGGGGCGAGCCGGAGCTGGCGGAGATGGATGAG CCCGEST: gi|10773561|gb|AV624384.1|AV624384
genomic: TGCTGCCCAAGCTGAGCAGGGGCGAGCCGGAGCTGGCGGAGATGGATGAGgtgtgtgagg ... gcacctgcagCCCG
EST: TGCTGCCCAAGCTGAGCAGGGGCGAGCCGGAGCTGGCGGAGATGGATGAG CCCGEST: gi|9210100|gb|BE337015.1|BE337015
genomic: TGCTGCCCAAGCTGAGCAGGGGCGAGCCGGAGCTGGCGGAGATGGATGAGgtgtgtgagg ... gcacctgcagCCCG
EST: TGCTGCCCAAGCTGAGCAGGGGCGAGCCGGAGCTGGCGGAGATGGATGAG CCCG
genomic: TGCTGCCCAAGCTGAGCAGGGGCGAGCCGGAGCTGGCGGAGATGGATGAGgtgtgtgagg ... gcacctgcagCCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGCCGACCTGGACAAGGTGGCGGCGCGCTTCACGGTGTGTCGTGAGCTGCTGCCCAAGCTGAGCAGGGGCGAGCCGGAGCTGGCGGAGATGGATGAGgtgtgtgaggcgtgtgtgtgtatgtgtgtgtgtgtgcattgtcgtgtgcgtgtcgtgtgcatgcgtgggggaggggtgaaactgcgtgcgttggccacgg
- - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgtgc