1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCTATGCCATAGACCCAAAGCTCGTGCTCAATCCTGAAAAGCTCAAGgtgagaccgagcgtcaccgaacctctgtcagacgctgctgcgtgcttcggacacctagactgacagcctgccggcgcatgctgccctgcacccgtcaggt...
species | Chlamydomonas reinhardtii |
transcript | EDP02681 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCTATGCCATAGACCCAAAGCTCGTGCTCAATCCTGAAAAGCTCAAG GCTGCCGACCTGGACAAGGTGGCGGCGCGCTTCACGGTGTGTCGTGAGCTGEST: gi|10772353|gb|AV623176.1|AV623176
genomic: TCTATGCCATAGACCCAAAGCTCGTGCTCAATCCTGAAAAGCTCAAGgtgagaccga ... acgcacacagGCTGCCGACCTGGACAAGGTGGCGGCGCGCTTCACGGTGTGTCGTGAGCTG
EST: TCTATGCCATAGACCCAAAGCTCGTGCTCAATCCTGAAAAGCTCAAG GCTGCCGACCTGGACAAGGTGGCGGCGCGCTTCACGGTGTGTCGTGAGCTGEST: gi|10127998|gb|BE726814.1|BE726814
genomic: TCTATGCCATAGACCCAAAGCTCGTGCTCAATCCTGAAAAGCTCAAGgtgagaccga ... acgcacacagGCTGCCGACCTGGACAAGGTGGCGGCGCGCTTCACGGTGTGTCGTGAGCTG
EST: TCTATGCCATAGACCCAAAGCTCGTGCTCAATCCTGAAAAGCTCAAG GCTGCCGACCTGGACAAGGTGGCGGCGCGCTTCACGGTGTGTCGTGAGCTGEST: gi|10773561|gb|AV624384.1|AV624384
genomic: TCTATGCCATAGACCCAAAGCTCGTGCTCAATCCTGAAAAGCTCAAGgtgagaccga ... acgcacacagGCTGCCGACCTGGACAAGGTGGCGGCGCGCTTCACGGTGTGTCGTGAGCTG
EST: TCTATGCCATAGACCCAAAGCTCGTGCTCAATCCTGAAAAGCTCAAG GCTGCTGACCTGGACAAGGTGGCGGCGCGCTTCACGGTGTGTCGTGAGCTGEST: gi|9210100|gb|BE337015.1|BE337015
genomic: TCTATGCCATAGACCCAAAGCTCGTGCTCAATCCTGAAAAGCTCAAGgtgagaccga ... acgcacacagGCTGCCGACCTGGACAAGGTGGCGGCGCGCTTCACGGTGTGTCGTGAGCTG
EST: TCTATGCCATTGACCCAAAGCTCGTGCTCAATCCTGAAAAGCTCAAG GCTGCCGACCTGGACAAGGTGGCGGCGCGCTTCACGGTGTGTCGTGAGCTG
genomic: TCTATGCCATAGACCCAAAGCTCGTGCTCAATCCTGAAAAGCTCAAGgtgagaccga ... acgcacacagGCTGCCGACCTGGACAAGGTGGCGGCGCGCTTCACGGTGTGTCGTGAGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTATGCCATAGACCCAAAGCTCGTGCTCAATCCTGAAAAGCTCAAGgtgagaccgagcgtcaccgaacctctgtcagacgctgctgcgtgcttcggacacctagactgacagcctgccggcgcatgctgccctgcacccgtcaggt
- - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaccta