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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggcgcggccagcgcaggcacgaggttacacggggtgattacgcgcgggcgatcttgtgcagcgctcattagcagcttacagccactaccgcagcaatatgccagcacacaacaatacccgtgctcctgccctcccccctcagGACTACGTCGGCCCCGACGGCCAGCTGCTGCCCTCCGACCCCGCCGACCCCCGCCTGGAGGCCGTGGTGCGGGAGGCGCGCCGGGCGCTTATGGACAAGC

Basic information

species Chlamydomonas reinhardtii
transcript EDP02637
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10787888|gb|AV644560.1|AV644560
EST:     GAGTGCGCGGCGGCAAAGCCAAACTCAACTTCCCGGTCGAG                         GACTACGTCGGCCCCGACGGCCAGCTGCTGCCCTCCGACCCCGCCGACCCC
genomic: GAGTGCGCGGCGGCAAAGCCAAACTCAACTTCCCGGTCGAGgtgaggcgcg ... cccccctcagGACTACGTCGGCCCCGACGGCCAGCTGCTGCCCTCCGACCCCGCCGACCCC
EST: gi|10788343|gb|AV626063.1|AV626063
EST:     CATTCGAGTGCGCGGCGGCAAAGCCAAACTCAACTTCCCGGTCGAG                         GACTACGTCGGCCCCGACGGCCAGCTGCTGCCCTCCGACCCCGCCGACCCC
genomic: CATTCGAGTGCGCGGCGGCAAAGCCAAACTCAACTTCCCGGTCGAGgtgaggcgcg ... cccccctcagGACTACGTCGGCCCCGACGGCCAGCTGCTGCCCTCCGACCCCGCCGACCCC
EST: gi|6551248|gb|AV397032.1|AV397032
EST:     TCGCCATTCGAGTGCGCGGCGGCAAAGCCAAACTCAACTTCCCGGTCGAG                         GACTACGTCGGCCCCGACGGCCAGCTGCTGCCCTCC
genomic: TCGCCATTCGAGTGCGCGGCGGCAAAGCCAAACTCAACTTCCCGGTCGAGgtgaggcgcg ... cccccctcagGACTACGTCGGCCCCGACGGCCAGCTGCTGCCCTCC
EST: gi|10790017|gb|AV627383.1|AV627383
EST:     TCGCCATTCGAGTGCGCGGCGGCAAAGCCAAACTCAACTTCCCGGTCGAG                         GACTACGTCGGCCCCGACGGCCAGCTGCTGCCCTCCGACCCCGCCGACCCC
genomic: TCGCCATTCGAGTGCGCGGCGGCAAAGCCAAACTCAACTTCCCGGTCGAGgtgaggcgcg ... cccccctcagGACTACGTCGGCCCCGACGGCCAGCTGCTGCCCTCCGACCCCGCCGACCCC
EST: gi|6549856|gb|AV395640.1|AV395640
EST:     TCGCCATTCGAGTGCGCGGCGGCAAAGCCAAACTCAACTTCCCGGTCGAG                         GACTACGTCGGCCCCGACGGCCAGCTGCTGACCTCCGACCCCGCCGAACCC
genomic: TCGCCATTCGAGTGCGCGGCGGCAAAGCCAAACTCAACTTCCCGGTCGAGgtgaggcgcg ... cccccctcagGACTACGTCGGCCCCGACGGCCAGCTGCTGCCCTCCGACCCCGCCGACCCC
EST: gi|49466072|gb|BP093985.1|BP093985
EST:     TCGCCATTCGAGTGCGCGGCGGCAAAGCCAAACTCAACTTCCCGGTCGAG                         GACTACGTCGGCCCCGACGGC
genomic: TCGCCATTCGAGTGCGCGGCGGCAAAGCCAAACTCAACTTCCCGGTCGAGgtgaggcgcg ... cccccctcagGACTACGTCGGCCCCGACGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgcagcaatatgccagcacacaacaatacccgtgctcctgccctcccccctcagGACTACGTCGGCCCCGACGGCCAGCTGCTGCCCTCCGACCCCGCCGACCCCCGCCTGGAGGCCGTGGTGCGGGAGGCGCGCCGGGCGCTTATGGACAAGC
                             cccgtgctcctgccct  CT-rich tract
                      aacaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgaggcgcggccagcgcaggcacgaggttacacggggtgattacgcgcgggcgatcttgtgcagcgctcattagcagcttacagccactaccgcagcaatatgccagcacacaacaatacccgtgctcctgccctcccccctcagGACTACGTCGGCCCCGACGGCCAGCTGCTGCCCTCCGACCCCGCCGACCCCCGCCTGGAGGCCGTGGTGCGGGAGGCGCGCCGGGCGCTTATGGACAAGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG