1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTATGGACGACGCGGTTCGGGCAGCGGGCGATGCGCTCGGCGCCCGTCGCCCGCCCACGTCTGCCTATCGCGGTGTCTGCTGGCACAGGAAGTCAAAGCGgtgagctgctgcgtgattatgacagcgcgtgcagtagaggtgactccggggttcgtggagtcagtcgacatgggacggacagggtgtgggcagtggtgtg...
species | Chlamydomonas reinhardtii |
transcript | EDP02637 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGCCCACGTCTGCCTATCGCGGTGTCTGCTGGCACAGGAAGTCAAAGCG GTGGCAGAGCGCTATCAACAGTTCTGGCAAGCACGTGTACCTGEST: gi|10791568|gb|AV628934.1|AV628934
genomic: CCGCCCACGTCTGCCTATCGCGGTGTCTGCTGGCACAGGAAGTCAAAGCGgtgagctgct ... gtgcctgcagGTGGCAGAGCGCTATCAACAGTTCTGGCAAGCACGTGTACCTG
EST: CCGCCCACGTCTGCCTATCGCGGTGTCTGCTGGCACAGGAAGTCAAAGCG GTGGCAGAGCGCTATCAACEST: gi|10788344|gb|AV626064.1|AV626064
genomic: CCGCCCACGTCTGCCTATCGCGGTGTCTGCTGGCACAGGAAGTCAAAGCGgtgagctgct ... gtgcctgcagGTGGCAGAGCGCTATCAAC
EST: CCGCCCACGTCTGCCTATCGCGGTGTCTGCTGGCACAGGAAGTCAAAGCG GTGGCAGAGCGCTATCAACAGTTCTGGCAAGCACGTEST: gi|10793150|gb|AV630516.1|AV630516
genomic: CCGCCCACGTCTGCCTATCGCGGTGTCTGCTGGCACAGGAAGTCAAAGCGgtgagctgct ... gtgcctgcagGTGGCAGAGCGCTATCAACAGTTCTGGCAAGCACGT
EST: CCGCCCACGTCTGCCTATCGCGGTGTCTGCTGGCACAGGAAGTCAAAGCG GTGGCAGAGCGCTATCAACAGTTCTGGCAAGCACGTGTACCTGEST: gi|10788962|gb|AV626682.1|AV626682
genomic: CCGCCCACGTCTGCCTATCGCGGTGTCTGCTGGCACAGGAAGTCAAAGCGgtgagctgct ... gtgcctgcagGTGGCAGAGCGCTATCAACAGTTCTGGCAAGCACGTGTACCTG
EST: CCGCCCACGTCTGCCTATCGCGGTGTCTGCTGGCACAGGAAGTCAAAGCG GTGGCAGAGCGCTATCAACAGTTCTGGCAAGCACGTGTACCTGEST: gi|10792893|gb|AV630259.1|AV630259
genomic: CCGCCCACGTCTGCCTATCGCGGTGTCTGCTGGCACAGGAAGTCAAAGCGgtgagctgct ... gtgcctgcagGTGGCAGAGCGCTATCAACAGTTCTGGCAAGCACGTGTACCTG
EST: CCGCCCACGTCTGCCTATCGCGGTGTCTGCTGGCACAGGAAGTCAAAGCG GTGGCAGAGCGCTATCAACAGTTCTGGCAAGCACGTGTAACCTGEST: gi|6549628|gb|AV395412.1|AV395412
genomic: CCGCCCACGTCTGCCTATCGCGGTGTCTGCTGGCACAGGAAGTCAAAGCGgtgagctgct ... gtgcctgcagGTGGCAGAGCGCTATCAACAGTTCTGGCAAGCACGTGTA-CCTG
EST: CCGCCCACGTCTGCCTATCGCGGTGTCTGCTGGCACAGGAAGTCAAAGCG GTGGCAGAGCGCTATCAACAGTTCTGGCAAGCACGTGTACCTGEST: gi|6549856|gb|AV395640.1|AV395640
genomic: CCGCCCACGTCTGCCTATCGCGGTGTCTGCTGGCACAGGAAGTCAAAGCGgtgagctgct ... gtgcctgcagGTGGCAGAGCGCTATCAACAGTTCTGGCAAGCACGTGTACCTG
EST: CCGCCCACGTCTGCCTATCGCGGTGTCTGCTGGCACAGGAAGTCAAAGCG GTGGCAGAGCGCTATCAACAGTTCTGGCAAGCACGTGTACCTGEST: gi|49466072|gb|BP093985.1|BP093985
genomic: CCGCCCACGTCTGCCTATCGCGGTGTCTGCTGGCACAGGAAGTCAAAGCGgtgagctgct ... gtgcctgcagGTGGCAGAGCGCTATCAACAGTTCTGGCAAGCACGTGTACCTG
EST: CCGCCCACGTCTGCCTATCGCGGTGTCTGCTGGCACAGGAAGTCAAAGCG GTGGCAGAGCGCTATCAACAGTTCTGGCAAGCACGTGTACCTG
genomic: CCGCCCACGTCTGCCTATCGCGGTGTCTGCTGGCACAGGAAGTCAAAGCGgtgagctgct ... gtgcctgcagGTGGCAGAGCGCTATCAACAGTTCTGGCAAGCACGTGTACCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATGGACGACGCGGTTCGGGCAGCGGGCGATGCGCTCGGCGCCCGTCGCCCGCCCACGTCTGCCTATCGCGGTGTCTGCTGGCACAGGAAGTCAAAGCGgtgagctgctgcgtgattatgacagcgcgtgcagtagaggtgactccggggttcgtggagtcagtcgacatgggacggacagggtgtgggcagtggtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttcgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtcagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agggtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggtgt