1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagcgagaactcgggttgggttcaaccggctgaatgcacgaacacaaaatgtccgcggccagctactctagcgggcggattacggcctacgttggatgctggactcactgcgcttttgcctggttttccttggcagGTCGCCATTCGAGTGCGCGGCGGCAAAGCCAAACTCAACTTCCCGGTCGAG
species | Chlamydomonas reinhardtii |
transcript | EDP02637 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGAGCTTTGATACGGAGGAGGAGGCTGCGCGCATGTAAGACAAG GTCGCCATTCGAGTGCGCGGCGGCAAAGCCAAACTCAACTTEST: gi|6551248|gb|AV397032.1|AV397032
genomic: GGGAGCTTTGATACGGAGGAGGAGGCTGCGCGCATGTTTGACAAGgtgagcgaga ... tccttggcagGTCGCCATTCGAGTGCGCGGCGGCAAAGCCAAACTCAACTT
EST: GGGAGCTTTGATACGGAGGAGGAGGCTGCGCGCATGTTTGACAAG GTCGCCATTCGAGTGCGCGGCGGCAAAGCCAAACTCAACTTCCCGGTCGAGEST: gi|10788962|gb|AV626682.1|AV626682
genomic: GGGAGCTTTGATACGGAGGAGGAGGCTGCGCGCATGTTTGACAAGgtgagcgaga ... tccttggcagGTCGCCATTCGAGTGCGCGGCGGCAAAGCCAAACTCAACTTCCCGGTCGAG
EST: GGGAGCTTTGATACGGAGGAGGAGGCTGCGCGCATGTTTGACAAG GTCGCCATTCGAGTGCGCGGCGGCAAAGCCAAACTCAACTTCCCGGTCGAGEST: gi|6549856|gb|AV395640.1|AV395640
genomic: GGGAGCTTTGATACGGAGGAGGAGGCTGCGCGCATGTTTGACAAGgtgagcgaga ... tccttggcagGTCGCCATTCGAGTGCGCGGCGGCAAAGCCAAACTCAACTTCCCGGTCGAG
EST: GGGAGCTTTGATACGGAGGAGGAGGCTGCGCGCATGTTAGACAAG GTCGCCATTCGAGTGCGCGGCGGCAAAGCCAAACTCAACTTCCCGGTCGAGEST: gi|49466072|gb|BP093985.1|BP093985
genomic: GGGAGCTTTGATACGGAGGAGGAGGCTGCGCGCATGTTTGACAAGgtgagcgaga ... tccttggcagGTCGCCATTCGAGTGCGCGGCGGCAAAGCCAAACTCAACTTCCCGGTCGAG
EST: GGGAGCTTTGATACGGAGGAGGAGGCTGCGCGCATGTTTGACAAG GTCGCCATTCGAGTGCGCGGCGGCAAAGCCAAACTCAACTTCCCGGTCGAG
genomic: GGGAGCTTTGATACGGAGGAGGAGGCTGCGCGCATGTTTGACAAGgtgagcgaga ... tccttggcagGTCGCCATTCGAGTGCGCGGCGGCAAAGCCAAACTCAACTTCCCGGTCGAG
acggcctacgttggatgctggactcactgcgcttttgcctggttttccttggcagGTCGCCATTCGAGTGCGCGGCGGCAAAGCCAAACTCAACTTCCCGGTCGAG
gactcac putative branch site (score: 2)
ttttcctt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcgagaactcgggttgggttcaaccggctgaatgcacgaacacaaaatgtccgcggccagctactctagcgggcggattacggcctacgttggatgctggactcactgcgcttttgcctggttttccttggcagGTCGCCATTCGAGTGCGCGGCGGCAAAGCCAAACTCAACTTCCCGGTCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG