1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cactgcaagggcatgacattggggcagtagtctttctcgagcacagattattgcgcgacacgccttcattttccctttcatccacatacatcggctgcagCTGGACGCTCCCTGTGGCTCGCTGGCCTGGATGCCGCTGGTTCTGGAGCAGGTCCCGGACATGACCTACACCGGCATTGACGTGGCGTGTGATGTCATCG
species | Chlamydomonas reinhardtii |
transcript | EDP01984 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCGGCCCAAGCTTGTCGACGTCATCAAGAAGTATGGCATCAAGTCAATG CTGGACGCTCCCTGTGGCTCGCTGGCCTGGATGCCGCTGGTTCTGGAGCAGEST: gi|161790172|gb|FC076951.1|FC076951
genomic: TCCGGCCCAAGCTTGTCGACGTCATCAAGAAGTATGGCATCAAGTCAATGgtgaaagggg ... tcggctgcagCTGGACGCTCCCTGTGGCTCGCTGGCCTGGATGCCGCTGGTTCTGGAGCAG
EST: TCCGGCCCAAGCTTGTCGACGTCATCAAGAAGTATGGCATCAAGTCAATG CTGGACGCTCCCTGTGGCTCGCTGGCCTGGATGCCGCTGGTTCTGGAGCAGEST: gi|161813197|gb|FC101418.1|FC101418
genomic: TCCGGCCCAAGCTTGTCGACGTCATCAAGAAGTATGGCATCAAGTCAATGgtgaaagggg ... tcggctgcagCTGGACGCTCCCTGTGGCTCGCTGGCCTGGATGCCGCTGGTTCTGGAGCAG
EST: TCCGGCCCAAGCTTGTCGACGTCATCAAGAAGTATGGCATCAAGTCAATG CTGGACGCTCCCTGTGGCTCGCTGGCCTGGATGCCGCTGGTTCTGGAGCAG
genomic: TCCGGCCCAAGCTTGTCGACGTCATCAAGAAGTATGGCATCAAGTCAATGgtgaaagggg ... tcggctgcagCTGGACGCTCCCTGTGGCTCGCTGGCCTGGATGCCGCTGGTTCTGGAGCAG
gattattgcgcgacacgccttcattttccctttcatccacatacatcggctgcagCTGGACGCTCCCTGTGGCTCGCTGGCCTGGATGCCGCTGGTTCTGGAGCAGGTCCCGGACATGACCTACACCGGCATTGACGTGGCGTGTGATGTCATCG
ttcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cactgcaagggcatgacattggggcagtagtctttctcgagcacagattattgcgcgacacgccttcattttccctttcatccacatacatcggctgcagCTGGACGCTCCCTGTGGCTCGCTGGCCTGGATGCCGCTGGTTCTGGAGCAGGTCCCGGACATGACCTACACCGGCATTGACGTGGCGTGTGATGTCATCG
cactgca
- - - - - - - - - - - - - - - - - - - - - acagatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acataca