1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ACACCATGCGGTTATTTTTGCACAGTTCTCAGCGTGCGACAACCCCGCCTGCATCAAAGCCAAGCAAGACGCGGAACAGTTGTCGGAGCGGGTGTTCATGgtgcgtgggcgtcaagggaggccccctgcagggcatcgtacatgggcttacggggcgtcgtaccaccagtcttgaacggttggcaacgttggcaacgttgctactgatctcttacgtcaacctcggtttgaaagcgcaactccaatgttggatcttttgcgtcatcgcatgtgataccatgaactag
species | Chlamydomonas reinhardtii |
transcript | EDP01984 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCATCAAAGCCAAGCAAGACGCGGAACAGTTGTCGGAGCGGGTGTTCATG GTCTGGGACTCACACGGCCCGCACGTGCGGCTGGAGATGACCATGCGGCTAEST: gi|161790172|gb|FC076951.1|FC076951
genomic: GCATCAAAGCCAAGCAAGACGCGGAACAGTTGTCGGAGCGGGTGTTCATGgtgcgtgggc ... catgaactagGTCTGGGACTCACACGGCCCGCACGTGCGGCTGGAGATGACCATGCGGCTA
EST: GCATCAAAGCCAAGCAAGACGCGGAACAGTTGTCGGAGCGGGTGTTCATG GTCTGGGACTCACACGGCCCGCACGTGCGGCTGGAGATGACCATGCGGCTAEST: gi|161813197|gb|FC101418.1|FC101418
genomic: GCATCAAAGCCAAGCAAGACGCGGAACAGTTGTCGGAGCGGGTGTTCATGgtgcgtgggc ... catgaactagGTCTGGGACTCACACGGCCCGCACGTGCGGCTGGAGATGACCATGCGGCTA
EST: GCATCAAAGCCAAGCAAGACGCGGAACAGTTGTCGGAGCGGGTGTTCATG GTCTGGGACTCACACGGCCCGCACGTGCGGCTGGAGATGACCATGCGGCTA
genomic: GCATCAAAGCCAAGCAAGACGCGGAACAGTTGTCGGAGCGGGTGTTCATGgtgcgtgggc ... catgaactagGTCTGGGACTCACACGGCCCGCACGTGCGGCTGGAGATGACCATGCGGCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACACCATGCGGTTATTTTTGCACAGTTCTCAGCGTGCGACAACCCCGCCTGCATCAAAGCCAAGCAAGACGCGGAACAGTTGTCGGAGCGGGTGTTCATGgtgcgtgggcgtcaagggaggccccctgcagggcatcgtacatgggcttacggggcgtcgtaccaccagtcttgaacggttggcaacgttggcaacgttgctactgatctcttacgtcaacctcggtttgaaagcgcaactccaatgttggatcttttgcgtcatcgcatgtgataccatgaactag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA