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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taaacgatccgcattgctgggcggaatgcggtatccctcgccatacccctgaattctccactcacaccttaccccactacaccccgccacacgcgcacagGCCAACCGCGCGCACACGTACCTGGGCAAGCGCGAGAGCGAGTGGCACGCCACGCAGGACGAGGAGGACATCTACCCCAACTTTGTCAACATGGCCCAGG

Basic information

species Chlamydomonas reinhardtii
transcript EDP01876
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161805706|gb|FC093674.1|FC093674
EST:     ACAACCAGCACCTGGGCATGGTGGTGCAGTGGGAGGACAGGTTCTACAAG                         GCCAACCGCGCGCACACGTACCTGGGCAAGCGCGAGAGCGAGTGGCACGCC
genomic: ACAACCAGCACCTGGGCATGGTGGTGCAGTGGGAGGACAGGTTCTACAAGgtgagaggga ... acgcgcacagGCCAACCGCGCGCACACGTACCTGGGCAAGCGCGAGAGCGAGTGGCACGCC
EST: gi|16435578|gb|BM000798.1|BM000798
EST:     ACAACCAGCACCTGGGCATGGTGGTGCAGTGGGAGGACAGGTTCTACAAG                         GCCAACCGCGCGCACACGTACCTGGGCAAGCGCGAGAGCGAGTGGCACGCC
genomic: ACAACCAGCACCTGGGCATGGTGGTGCAGTGGGAGGACAGGTTCTACAAGgtgagaggga ... acgcgcacagGCCAACCGCGCGCACACGTACCTGGGCAAGCGCGAGAGCGAGTGGCACGCC
EST: gi|16073006|gb|BI875002.1|BI875002
EST:     ACAACCAGCACCTGGGCATGGTGGTGCAGTGGGAGGACAGGTTCTACAAG                         GCCAACCGCGCGCACACGTACCTGGGCAAGCGCGAGAGCGAGTGGCACGCC
genomic: ACAACCAGCACCTGGGCATGGTGGTGCAGTGGGAGGACAGGTTCTACAAGgtgagaggga ... acgcgcacagGCCAACCGCGCGCACACGTACCTGGGCAAGCGCGAGAGCGAGTGGCACGCC
EST: gi|15697273|gb|BI721578.1|BI721578
EST:     ACAACCAGCACCTGGGCATGGTGGTGCAGTGGGAGGACAGGTTCTACAAG                         GCCAACCGCGCGCACACGTACCTGGGCAAGCGCGAGAGCGAGTGGCACGCC
genomic: ACAACCAGCACCTGGGCATGGTGGTGCAGTGGGAGGACAGGTTCTACAAGgtgagaggga ... acgcgcacagGCCAACCGCGCGCACACGTACCTGGGCAAGCGCGAGAGCGAGTGGCACGCC
EST: gi|15702979|gb|BI727284.1|BI727284
EST:     ACAACCAGCACCTGGGCATGGTGGTGCAGTGGGAGGACAGGTTCTACAAG                         GCCAACCGTGCGCA
genomic: ACAACCAGCACCTGGGCATGGTGGTGCAGTGGGAGGACAGGTTCTACAAGgtgagaggga ... acgcgcacagGCCAACCGCGCGCA
EST: gi|14233065|gb|BG851881.1|BG851881
EST:     CCTGGGCATGGTGGTGCAGTGGGAGGACAGGTTCTACAAG                         GCCAACCGCGCGCACACGTATCTGGGCAAGCGCGAGAGCGAGTGGCACTCC
genomic: CCTGGGCATGGTGGTGCAGTGGGAGGACAGGTTCTACAAGgtgagaggga ... acgcgcacagGCCAACCGCGCGCACACGTACCTGGGCAAGCGCGAGAGCGAGTGGCACGCC
EST: gi|15372067|gb|BI531493.1|BI531493
EST:     ACAACCAGCACCTGGGCATGGTGGTGCAGTGGGAGGACAGGTTCTACAAG                         GCCAACCGCGCGCACACGTACCTGGGCAAGCGCGAGAGCGAGTGGCACGCC
genomic: ACAACCAGCACCTGGGCATGGTGGTGCAGTGGGAGGACAGGTTCTACAAGgtgagaggga ... acgcgcacagGCCAACCGCGCGCACACGTACCTGGGCAAGCGCGAGAGCGAGTGGCACGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
taaacgatccgcattgctgggcggaatgcggtatccctcgccatacccctgaattctccactcacaccttaccccactacaccccgccacacgcgcacagGCCAACCGCGCGCACACGTACCTGGGCAAGCGCGAGAGCGAGTGGCACGCCACGCAGGACGAGGAGGACATCTACCCCAACTTTGTCAACATGGCCCAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - atccgca
- - - - - - - - - - - - - - - - - - - - -cataccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - accccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacccc