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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGTGACGCAATGAAGGCCCTGCGAAGTGGAACCGCTGTGGCCCGGGGCCAAGCGGGCTGTGTTTCTCCCGCTCCGCGCCCTGTGCCTATGTCGTCTCAGgtgtgctggaatcactacagatgcagcgagatgggttgtgagaggcacacgccgagtgacttgcaatcgctttcctccgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP01876
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22064059|gb|BQ815588.1|BQ815588
EST:     AAGCGGGCTGTGTTTCTCCCGCTCCGCGCCCTGTGCCTATGTCGTCTTAG                         GCGATGATTCCGAGCACCAGCTCCCCAGCAGCTCGTGCACCCGCCCG
genomic: AAGCGGGCTGTGTTTCTCCCGCTCCGCGCCCTGTGCCTATGTCGTCTCAGgtgtgctgga ... tcctccgcagGCGATGATTCCGAGCACCAGCTCCCCAGCAGCTCGTGCACCCGCCCG
EST: gi|6549198|gb|AV394982.1|AV394982
EST:     AAGCGGGCTGTGTTTCTCCCGCTCCGCGCCCTGTGCCTATGTCGTCTCAG                         ACGATGATTCCGAGCACCAGCTCCCCAGCAACTCGTGCACCCGCCCG
genomic: AAGCGGGCTGTGTTTCTCCCGCTCCGCGCCCTGTGCCTATGTCGTCTCAGgtgtgctgga ... tcctccgcagGCGATGATTCCGAGCACCAGCTCCCCAGCAGCTCGTGCACCCGCCCG
EST: gi|49469613|gb|BP097474.1|BP097474
EST:     AAGCGGGCTGTGTTTCTCCCGCTCCGCGCCCTGTGCCTATGTCGTCTCAG                         ACGATGATTCCGAGCACCAGCTCCCCAGCAACTCGTGCACCCGCCCG
genomic: AAGCGGGCTGTGTTTCTCCCGCTCCGCGCCCTGTGCCTATGTCGTCTCAGgtgtgctgga ... tcctccgcagGCGATGATTCCGAGCACCAGCTCCCCAGCAGCTCGTGCACCCGCCCG