1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGCGCTGGGCGCGGCGGTGGCGTTCGACGGCAAGAACGGGCGGCCCAAGAAGACCGTGGTGGACATTGACGGCGACGGCTCCTTCCTCATGAACGTGCAGgtgcgtgcgcgcgtgaccagcagagggggtcaggggttgaatccttgttgctgggtggggcaaacatggtaatgctggaagaggccggcagtgcgcctgcttccttactggctacgttcgccggctgaccttctcctatgtcttcacccccccccccccctccccgctcctcgcctgctctcag
species | Chlamydomonas reinhardtii |
transcript | EDP01876 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AGACCGTGGTGGACATTGACGGCGACGGCTCCTTCCTCATGAACGTGCAG GAGCTGGCCACCATCTTCATTGAGAAGCTGGACGTGAAGGTGATGCTGCTCEST: gi|161805706|gb|FC093674.1|FC093674
genomic: AGACCGTGGTGGACATTGACGGCGACGGCTCCTTCCTCATGAACGTGCAGgtgcgtgcgc ... ctgctctcagGAGCTGGCCACCATCTTCATTGAGAAGCTGGACGTCAAGGTGATGCTGCTC
EST: AGACCGTGGTGGACATTGACGGCGACGGCTCCTTCCTCATGAACGTGCAG GAGCTGGCCACCATCTTCATTGAGAAGCTGGACGTCAAGGTGATGCTGCTCEST: gi|16435578|gb|BM000798.1|BM000798
genomic: AGACCGTGGTGGACATTGACGGCGACGGCTCCTTCCTCATGAACGTGCAGgtgcgtgcgc ... ctgctctcagGAGCTGGCCACCATCTTCATTGAGAAGCTGGACGTCAAGGTGATGCTGCTC
EST: AGACCGTGGTGGACATTGACGGCGACGGCTCCTTCCTCATGAACGTGCAG GAGCTGGCCACCATCTTCATTGAGAAGCTGGACGTCAAGGTGATGCTGCTCEST: gi|16073006|gb|BI875002.1|BI875002
genomic: AGACCGTGGTGGACATTGACGGCGACGGCTCCTTCCTCATGAACGTGCAGgtgcgtgcgc ... ctgctctcagGAGCTGGCCACCATCTTCATTGAGAAGCTGGACGTCAAGGTGATGCTGCTC
EST: AGACCGTGGTGGACATTGACGGCGACGGCTCCTTCCTCATGAACGTGCAG GAGCTGGCCACCATCTTCATTGAGAAGCTGGACGTCAAGGTGATGCTGCTCEST: gi|15702979|gb|BI727284.1|BI727284
genomic: AGACCGTGGTGGACATTGACGGCGACGGCTCCTTCCTCATGAACGTGCAGgtgcgtgcgc ... ctgctctcagGAGCTGGCCACCATCTTCATTGAGAAGCTGGACGTCAAGGTGATGCTGCTC
EST: AGACCGTGGTGGACATTGACGGCGACGGCTCCTTCCTCATGAACGTGCAG GAGCTGGCCACCATCTTCATTGAGAAGCTGGACGTCAAGGTGATGCTGCTCEST: gi|15372067|gb|BI531493.1|BI531493
genomic: AGACCGTGGTGGACATTGACGGCGACGGCTCCTTCCTCATGAACGTGCAGgtgcgtgcgc ... ctgctctcagGAGCTGGCCACCATCTTCATTGAGAAGCTGGACGTCAAGGTGATGCTGCTC
EST: TGACGGCGACGGCTCCTTCCTCATGAACGTGCAG GAGCTGGCCACCATCTTCATTGAGAAGCTGGACGTCAAGGTGATGCTGCTC
genomic: TGACGGCGACGGCTCCTTCCTCATGAACGTGCAGgtgcgtgcgc ... ctgctctcagGAGCTGGCCACCATCTTCATTGAGAAGCTGGACGTCAAGGTGATGCTGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGCTGGGCGCGGCGGTGGCGTTCGACGGCAAGAACGGGCGGCCCAAGAAGACCGTGGTGGACATTGACGGCGACGGCTCCTTCCTCATGAACGTGCAGgtgcgtgcgcgcgtgaccagcagagggggtcaggggttgaatccttgttgctgggtggggcaaacatggtaatgctggaagaggccggcagtgcgcctgcttccttactggctacgttcgccggctgaccttctcctatgtcttcacccccccccccccctccccgctcctcgcctgctctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA