1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttttggcgacttggccaggcagctccgtcagtccgacttggcacgccttgaccctgcccctgcccctgcccacacacgcctgcgcccgctcccaccccagACCGCCTTCCTGACGCTGGACGAGGCGCTCAAGGTGACCAACCGCCGCGTGAACGCGCTGGAGAACGTGGTTAAGCCCAAGCTGGAGAACACCATCTCCT
species | Chlamydomonas reinhardtii |
transcript | EDP01852 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGCCTACCTGAGCGCCGTGGAGCTGCTGGTGCAGCTGGCCAACCTGCAG ACCGCCTTCCTGACGCTEST: gi|15369014|gb|BI528440.1|BI528440
genomic: AGGCCTACCTGAGCGCCGTGGAGCTGCTGGTGCAGCTGGCCAACCTGCAGgtcagcagcc ... cccaccccagACCGCCTTCCTGACGCT
EST: AGGCCTACCTGAGCGCCGTGGAGCTGCTGGTGCAGCTGGCCAACCTGCAG ACCGCCTTCCTGACGCTGGACGAGGCGCTCAAGGTGACCAACCGCCGCGTGEST: gi|239841664|gb|GR283521.1|GR283521
genomic: AGGCCTACCTGAGCGCCGTGGAGCTGCTGGTGCAGCTGGCCAACCTGCAGgtcagcagcc ... cccaccccagACCGCCTTCCTGACGCTGGACGAGGCGCTCAAGGTGACCAACCGCCGCGTG
EST: AGGCCTACCTGAGCGCCGTGGAGCTGCTGGTGCAGCTGGCCAACCTGCAG ACCGCCTTCCTGACGCTGGACGAGGCGCTCAAGGTGACCAACCGCCGCGTG
genomic: AGGCCTACCTGAGCGCCGTGGAGCTGCTGGTGCAGCTGGCCAACCTGCAGgtcagcagcc ... cccaccccagACCGCCTTCCTGACGCTGGACGAGGCGCTCAAGGTGACCAACCGCCGCGTG
ccttgaccctgcccctgcccctgcccacacacgcctgcgcccgctcccaccccagACCGCCTTCCTGACGCTGGACGAGGCGCTCAAGGTGACCAACCGCCGCGTGAACGCGCTGGAGAACGTGGTTAAGCCCAAGCTGGAGAACACCATCTCCT
ccttgac putative branch site (score: 4)
cccgctcccacccc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttggcgacttggccaggcagctccgtcagtccgacttggcacgccttgaccctgcccctgcccctgcccacacacgcctgcgcccgctcccaccccagACCGCCTTCCTGACGCTGGACGAGGCGCTCAAGGTGACCAACCGCCGCGTGAACGCGCTGGAGAACGTGGTTAAGCCCAAGCTGGAGAACACCATCTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacacg