1 5' 3' | 2 5' 3' | 3 5' 3' |
GTGGTCAAAGTCCGCGGCGACCTTGATAACGTCGCTGGTGTGAAAATTCCGCGGTTTGAGTCGTTCGTGCTGCCGGGCGAGACCAAGATGGACCTCACGGgtgcgtccgtggaatagcttgacgggggggggggggggggttgggtgcatgacggaggggatggagtgtgcggggttgtgcacgcagtggggcagcgtgc...
species | Chlamydomonas reinhardtii |
transcript | EDP01852 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCGGTTTGAGTCGTTCGTGCTGCCGGGCGAGACCAAGATGGACCTCACGG GCCTGGGCCGCGGTGGCCAGCAGCTGCAGAGCTGCCGCAAGGCCTACCTGAEST: gi|15369014|gb|BI528440.1|BI528440
genomic: GCGGTTTGAGTCGTTCGTGCTGCCGGGCGAGACCAAGATGGACCTCACGGgtgcgtccgt ... gataccgcagGCCTGGGCCGCGGTGGCCAGCAGCTGCAGAGCTGCCGCAAGGCCTACCTGA
EST: GCGGTTTGAGTCGTTCGTGCTGCCGGGCGAGACCAAGATGGACCTCACGG GCCTGGGCCGCGGTGGCCAGCAGCTGCAGAGCTGCCGCAAGGCCTACCTGAEST: gi|239841664|gb|GR283521.1|GR283521
genomic: GCGGTTTGAGTCGTTCGTGCTGCCGGGCGAGACCAAGATGGACCTCACGGgtgcgtccgt ... gataccgcagGCCTGGGCCGCGGTGGCCAGCAGCTGCAGAGCTGCCGCAAGGCCTACCTGA
EST: GCGGTTTGAGTCGTTCGTGCTGCCGGGCGAGACCAAGATGGACCTCACGG GCCTGGGCCGCGGTGGCCAGCAGCTGCAGAGCTGCCGCAAGGCCTACCTGA
genomic: GCGGTTTGAGTCGTTCGTGCTGCCGGGCGAGACCAAGATGGACCTCACGGgtgcgtccgt ... gataccgcagGCCTGGGCCGCGGTGGCCAGCAGCTGCAGAGCTGCCGCAAGGCCTACCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGTCAAAGTCCGCGGCGACCTTGATAACGTCGCTGGTGTGAAAATTCCGCGGTTTGAGTCGTTCGTGCTGCCGGGCGAGACCAAGATGGACCTCACGGgtgcgtccgtggaatagcttgacgggggggggggggggggttgggtgcatgacggaggggatggagtgtgcggggttgtgcacgcagtggggcagcgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtgcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgcac