1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...acctgcctaacgctgaccgtgtgttgacatctttgcgcccagtccgtaatgtgcgcattctggttcttcacacctccccctcccgccctccgtctagcagGGCCGCTTCATTCACGTGCCGCCGCCCGAGCCCATGTGCAACTGGGACACCAGCTTCGGGCTGCCCTGGTGGCGGGATGCCAAAAAGTATCAG
species | Chlamydomonas reinhardtii |
transcript | EDP01830 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCGGCATATCTGCCCAGCAACACACATTGAGCGTTTCTACACGCCCATG GGCCGCTTCATTCACGTGCCGCCGCCCGAGCCCATGTGCAACTGGGACACCEST: gi|16436233|gb|BM001453.1|BM001453
genomic: AGCGGCATATCTGCCCAGCAACACACATTGAGCGTTTCTACACGCCCATGgtgagctgcg ... cgtctagcagGGCCGCTTCATTCACGTGCCGCCGCCCGAGCCCATGTGCAACTGGGACACC
EST: AGCGGCATATCTGCCCAGCAACACACATTGAGCGTTTCTACACGCCCATG GGCCGCTTCATTCACGTGCCGCCGCCCGAGCCCATGTGCAACTGGGACACC
genomic: AGCGGCATATCTGCCCAGCAACACACATTGAGCGTTTCTACACGCCCATGgtgagctgcg ... cgtctagcagGGCCGCTTCATTCACGTGCCGCCGCCCGAGCCCATGTGCAACTGGGACACC
gtaatgtgcgcattctggttcttcacacctccccctcccgccctccgtctagcagGGCCGCTTCATTCACGTGCCGCCGCCCGAGCCCATGTGCAACTGGGACACCAGCTTCGGGCTGCCCTGGTGGCGGGATGCCAAAAAGTATCAG
ttctggttcttcacac CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acctgcctaacgctgaccgtgtgttgacatctttgcgcccagtccgtaatgtgcgcattctggttcttcacacctccccctcccgccctccgtctagcagGGCCGCTTCATTCACGTGCCGCCGCCCGAGCCCATGTGCAACTGGGACACCAGCTTCGGGCTGCCCTGGTGGCGGGATGCCAAAAAGTATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - -cgtgtgt
- - - - - - - - - - - - - - atctttg
- - - - - - - - - - - - - - - - - - - - - - - - atgtgcg