Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGAGCCTGAAGAAGCGCCAGCAGGAGAAGAACAAGACCGACGCGGCCGAGTACCACAAGCTGCTCATGCAGCGCCTCAAGGAGCAGCGCGAGCGCCGgtgaggacacgagggcggaagtggcagtaccgtcgcagccattgcgggtgctgggaggtccgctgtttgtagcgacttcgcgcgtaaaccaggcgcacca...

Basic information

species Chlamydomonas reinhardtii
transcript EDP01810
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9460761|gb|BE453397.1|BE453397
EST:     ACGGCCGCCGGAAGGGCGAGCGCCGCCGGAAGTCGGTTCGCGGCTGCATCGTGTCGCCCGACCTGGCCGTGCTGAACCTGGTCATTGTCAAGAAGGGCGAG
genomic: ACGGCCGCCGGAAGGGCGAGCGCCGCCGGAAGTCGGTTCGCGGCTGCATCGTGTCGCCCGACCTGGCCGTGCTGAACCTGGTCATTGTCAAGAAGGGCGAG
EST: gi|14227003|gb|BG845819.1|BG845819
EST:     ACGGCCGCCGGAAGGGCGAGCGCCGCCGGAAGTCGGTTCGCGGCTGCATCGTGTCGCCCGACCTGGCCGTGCTGAACCTGGTCATTGTCAAGAAGGGCGAG
genomic: ACGGCCGCCGGAAGGGCGAGCGCCGCCGGAAGTCGGTTCGCGGCTGCATCGTGTCGCCCGACCTGGCCGTGCTGAACCTGGTCATTGTCAAGAAGGGCGAG
EST: gi|6541295|gb|AV387079.1|AV387079
EST:     ACGGCCGCCGGAAGGGCGAGCGCCGCCGGAAGTCGGTTCGCGGCTGCATCGTGTCGCCCGACCTGGCCGTGCTGAACCTGGTCATTGTCAAGAAGGGCGAG
genomic: ACGGCCGCCGGAAGGGCGAGCGCCGCCGGAAGTCGGTTCGCGGCTGCATCGTGTCGCCCGACCTGGCCGTGCTGAACCTGGTCATTGTCAAGAAGGGCGAG
EST: gi|6552165|gb|AV397949.1|AV397949
EST:     GAGTACCACAAGCTGCTCATGCAGCGCCTCAAGGAGCACCGCGAGCGCCG                         CTCGGAGTCGCTGGCCAAGAAGCGCGCCATGCGCGTGGCCAGC
genomic: GAGTACCACAAGCTGCTCATGCAGCGCCTCAAGGAGCAGCGCGAGCGCCGgtgaggacac ... catctcacagCTCGGAGTCGCTGGCCAAGAAGCGCGCCATGCGCGTGGCCAGC
EST: gi|34989765|gb|CF563682.1|CF563682
EST:     ACGGCCGCCGGAAGGGCGAGCGCCGCCGGAAGTCGGTTCGCGGCTGCATCGTGTCGCCCGACCTGGCCGTGCTGAACCTGGTCATTGTCAAGAAGGGCGAG
genomic: ACGGCCGCCGGAAGGGCGAGCGCCGCCGGAAGTCGGTTCGCGGCTGCATCGTGTCGCCCGACCTGGCCGTGCTGAACCTGGTCATTGTCAAGAAGGGCGAG
EST: gi|161802996|gb|FC088309.1|FC088309
EST:     ACGGCCGCCGGAAGGGCGAGCGCCGCCGGAAGTCGGTTCGCGGCTGCATCGTGTCGCCTGACCTGGCCGTGCTGAACCTGGTCATTGTCAAGAAGGGCGAG
genomic: ACGGCCGCCGGAAGGGCGAGCGCCGCCGGAAGTCGGTTCGCGGCTGCATCGTGTCGCCCGACCTGGCCGTGCTGAACCTGGTCATTGTCAAGAAGGGCGAG
EST: gi|161798224|gb|FC083459.1|FC083459
EST:     ACGGCCGCCGGAAGGGCGAGCGCCGCCGGAAGTCGGTTCGCGGCTGCATCGTGTCGCCTGACCTGGCCGTGCTGAACCTGGTCATTGTCAAGAAGGGCGAG
genomic: ACGGCCGCCGGAAGGGCGAGCGCCGCCGGAAGTCGGTTCGCGGCTGCATCGTGTCGCCCGACCTGGCCGTGCTGAACCTGGTCATTGTCAAGAAGGGCGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCAAGAGCCTGAAGAAGCGCCAGCAGGAGAAGAACAAGACCGACGCGGCCGAGTACCACAAGCTGCTCATGCAGCGCCTCAAGGAGCAGCGCGAGCGCCGgtgaggacacgagggcggaagtggcagtaccgtcgcagccattgcgggtgctgggaggtccgctgtttgtagcgacttcgcgcgtaaaccaggcgcacca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaccag