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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtggcttgcggcgccgtggggttcgggtgcgggcgggcggctcttacagacacagcagcagggcgcgtcagggcgggtgttgcacgggctcatggcacagatttggcgacgacacactggctccttccattcttgacgccgcctggctgcttcctcgctcgcgcgatgccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAAGAAGCGCCAGCAGGAGAAGAACAAGACCGACGCGGCCGAGTACCACAAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP01810
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34983131|gb|CF557048.1|CF557048
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCTAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCG
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCG
EST: gi|9460761|gb|BE453397.1|BE453397
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|22066944|gb|BQ817246.1|BQ817246
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|15695416|gb|BI719721.1|BI719721
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCT
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCT
EST: gi|14227003|gb|BG845819.1|BG845819
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCTGCA-GAGCCTGA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCC-GCAAGAGCCTGA
EST: gi|15701015|gb|BI725320.1|BI725320
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTG
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTG
EST: gi|6541295|gb|AV387079.1|AV387079
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|15702419|gb|BI726724.1|BI726724
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCG
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCG
EST: gi|10126297|gb|BE725001.1|BE725001
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|22072486|gb|BQ821824.1|BQ821824
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|16072054|gb|BI874050.1|BI874050
EST:     GGACCGACAAGAAACGGCA-GAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCG
genomic: GGACCGACAAGAA-CGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCG
EST: gi|22075653|gb|BQ824429.1|BQ824429
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|22059284|gb|BQ813352.1|BQ813352
EST:     CGGACCGACAAGAACGGCAAGAAGCATCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|15693874|gb|BI718179.1|BI718179
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGGCGCGCCCGCA-GAGCCTGA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAG-CGCGCCCGCAAGAGCCTGA
EST: gi|22059974|gb|BQ813640.1|BQ813640
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|22074770|gb|BQ823587.1|BQ823587
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGTCCTGCA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCA
EST: gi|10126283|gb|BE724987.1|BE724987
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|6542327|gb|AV388111.1|AV388111
EST:     CGGACCGACAAGAACGGCAAGAAGCAC-GCAAGTGCCC-AAGATC-AGCG                         GCTGGTGACCC
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCC
EST: gi|22053721|gb|BQ810902.1|BQ810902
EST:     GGACCGACAAGAACGGCAAGAAGCACCGCAAG-GCCCCCAAGATCCAGGG                         GCTGGTGACCCCCGCCGCCCTGCAGCG
genomic: GGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCC-AAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCG
EST: gi|6552165|gb|AV397949.1|AV397949
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGGCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|15702669|gb|BI726974.1|BI726974
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|9210678|gb|BE337593.1|BE337593
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCA
EST: gi|23358768|gb|BU646588.1|BU646588
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|6544530|gb|AV390314.1|AV390314
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCA-GATC-AGCG                         GCTG-TGACCCC
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCC
EST: gi|6541792|gb|AV387576.1|AV387576
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCGAGTGCCCCAAGATCCAGCG                         GTTGGTGACCCCGGC-GCC-TGGAG-GCAAGCGCGCC
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCC
EST: gi|10126375|gb|BE725079.1|BE725079
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|23365928|gb|BU653748.1|BU653748
EST:     CGGACCGACAAGATCGGCA-GAAGCACCGCAAGTGCCCCAAGATCCAGGG                         GCTGGTGACCC
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCC
EST: gi|22069912|gb|BQ819389.1|BQ819389
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGC
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGC
EST: gi|15698765|gb|BI723070.1|BI723070
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCC
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCC
EST: gi|22053950|gb|BQ811048.1|BQ811048
EST:     GGACCGACAAGAACGGCAAGAAGCANCGCAAGTGCCCCAAGATCCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGC
genomic: GGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCC-AGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGC
EST: gi|10126356|gb|BE725060.1|BE725060
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGC
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGC
EST: gi|23362738|gb|BU650558.1|BU650558
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|23363113|gb|BU650933.1|BU650933
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|22055164|gb|BQ811696.1|BQ811696
EST:     CGGACCGACAAGAACGGCAAGAAGCACCTCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGC
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGC
EST: gi|8828361|gb|BE212091.1|BE212091
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|23364213|gb|BU652033.1|BU652033
EST:     GGNACCGACA-GAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: GG-ACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|6541777|gb|AV387561.1|AV387561
EST:     CGGACCGACAAGAACGGCGAGAAGCACCGCNAGTGCCCCAAGATC-AGCG                         GCTGGTGACCCC-GC-GCC-TGCA-CGCA-GCGCGCC
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCC
EST: gi|23365769|gb|BU653589.1|BU653589
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|34989765|gb|CF563682.1|CF563682
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|49466378|gb|BP094291.1|BP094291
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGC
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGC
EST: gi|10191369|gb|BE761445.1|BE761445
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCNCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|6541615|gb|AV387399.1|AV387399
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCC
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCC
EST: gi|23361793|gb|BU649613.1|BU649613
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|22067333|gb|BQ817479.1|BQ817479
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|6542139|gb|AV387923.1|AV387923
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATTCAGCG                         GGTGGTGAACCCCGCCG
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCG
EST: gi|15702667|gb|BI726972.1|BI726972
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|15701014|gb|BI725319.1|BI725319
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|22068607|gb|BQ818471.1|BQ818471
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|6543065|gb|AV388849.1|AV388849
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|23359428|gb|BU647248.1|BU647248
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|161802996|gb|FC088309.1|FC088309
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|22057054|gb|BQ812486.1|BQ812486
EST:     GGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCANGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGA
genomic: GGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCA-GCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGA
EST: gi|16432734|gb|BI997960.1|BI997960
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|9028081|gb|BE238121.1|BE238121
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|15694209|gb|BI718514.1|BI718514
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|16072321|gb|BI874317.1|BI874317
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|161798224|gb|FC083459.1|FC083459
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|22072890|gb|BQ822228.1|BQ822228
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|9460640|gb|BE453337.1|BE453337
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|23367673|gb|BU655491.1|BU655491
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
EST: gi|23359427|gb|BU647247.1|BU647247
EST:     CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCG                         GCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA
genomic: CGGACCGACAAGAACGGCAAGAAGCACCGCAAGTGCCCCAAGATCCAGCGgtgggtggct ... gccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttccattcttgacgccgcctggctgcttcctcgctcgcgcgatgccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAAGAAGCGCCAGCAGGAGAAGAACAAGACCGACGCGGCCGAGTACCACAAG
        tcttgac  putative branch site (score: 3)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgggtggcttgcggcgccgtggggttcgggtgcgggcgggcggctcttacagacacagcagcagggcgcgtcagggcgggtgttgcacgggctcatggcacagatttggcgacgacacactggctccttccattcttgacgccgcctggctgcttcctcgctcgcgcgatgccaccgcagGCTGGTGACCCCCGCCGCCCTGCAGCGCAAGCGCGCCCGCAAGAGCCTGAAGAAGCGCCAGCAGGAGAAGAACAAGACCGACGCGGCCGAGTACCACAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC