1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttgcatgcatgctggtgctactgtgtgcacccatcggctcgacttttcttactcatccccatatcccccaccttgaacctgctcccaccccatctcacagCTCGGAGTCGCTGGCCAAGAAGCGCGCCATGCGCGTGGCCAGCCAGGCCTCCAAGGAGGCCTAA
species | Chlamydomonas reinhardtii |
transcript | EDP01810 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACGGCCGCCGGAAGGGCGAGCGCCGCCGGAAGTCGGTTCGCGGCTGCATCGTGTCGCCCGACCTGGCCGTGCTGAACCTGGTCATTGTCAAGAAGGGCGAGEST: gi|14227003|gb|BG845819.1|BG845819
genomic: ACGGCCGCCGGAAGGGCGAGCGCCGCCGGAAGTCGGTTCGCGGCTGCATCGTGTCGCCCGACCTGGCCGTGCTGAACCTGGTCATTGTCAAGAAGGGCGAG
EST: ACGGCCGCCGGAAGGGCGAGCGCCGCCGGAAGTCGGTTCGCGGCTGCATCGTGTCGCCCGACCTGGCCGTGCTGAACCTGGTCATTGTCAAGAAGGGCGAGEST: gi|6541295|gb|AV387079.1|AV387079
genomic: ACGGCCGCCGGAAGGGCGAGCGCCGCCGGAAGTCGGTTCGCGGCTGCATCGTGTCGCCCGACCTGGCCGTGCTGAACCTGGTCATTGTCAAGAAGGGCGAG
EST: ACGGCCGCCGGAAGGGCGAGCGCCGCCGGAAGTCGGTTCGCGGCTGCATCGTGTCGCCCGACCTGGCCGTGCTGAACCTGGTCATTGTCAAGAAGGGCGAGEST: gi|6552165|gb|AV397949.1|AV397949
genomic: ACGGCCGCCGGAAGGGCGAGCGCCGCCGGAAGTCGGTTCGCGGCTGCATCGTGTCGCCCGACCTGGCCGTGCTGAACCTGGTCATTGTCAAGAAGGGCGAG
EST: GAGTACCACAAGCTGCTCATGCAGCGCCTCAAGGAGCACCGCGAGCGCCG CTCGGAGTCGCTGGCCAAGAAGCGCGCCATGCGCGTGGCCAGCEST: gi|34989765|gb|CF563682.1|CF563682
genomic: GAGTACCACAAGCTGCTCATGCAGCGCCTCAAGGAGCAGCGCGAGCGCCGgtgaggacac ... catctcacagCTCGGAGTCGCTGGCCAAGAAGCGCGCCATGCGCGTGGCCAGC
EST: ACGGCCGCCGGAAGGGCGAGCGCCGCCGGAAGTCGGTTCGCGGCTGCATCGTGTCGCCCGACCTGGCCGTGCTGAACCTGGTCATTGTCAAGAAGGGCGAGEST: gi|161802996|gb|FC088309.1|FC088309
genomic: ACGGCCGCCGGAAGGGCGAGCGCCGCCGGAAGTCGGTTCGCGGCTGCATCGTGTCGCCCGACCTGGCCGTGCTGAACCTGGTCATTGTCAAGAAGGGCGAG
EST: ACGGCCGCCGGAAGGGCGAGCGCCGCCGGAAGTCGGTTCGCGGCTGCATCGTGTCGCCTGACCTGGCCGTGCTGAACCTGGTCATTGTCAAGAAGGGCGAGEST: gi|161798224|gb|FC083459.1|FC083459
genomic: ACGGCCGCCGGAAGGGCGAGCGCCGCCGGAAGTCGGTTCGCGGCTGCATCGTGTCGCCCGACCTGGCCGTGCTGAACCTGGTCATTGTCAAGAAGGGCGAG
EST: ACGGCCGCCGGAAGGGCGAGCGCCGCCGGAAGTCGGTTCGCGGCTGCATCGTGTCGCCTGACCTGGCCGTGCTGAACCTGGTCATTGTCAAGAAGGGCGAG
genomic: ACGGCCGCCGGAAGGGCGAGCGCCGCCGGAAGTCGGTTCGCGGCTGCATCGTGTCGCCCGACCTGGCCGTGCTGAACCTGGTCATTGTCAAGAAGGGCGAG
ttcttactcatccccatatcccccaccttgaacctgctcccaccccatctcacagCTCGGAGTCGCTGGCCAAGAAGCGCGCCATGCGCGTGGCCAGCCAGGCCTCCAAGGAGGCCTAA
ttcttac putative branch site (score: 2)
ctcccaccccatctc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcatgcatgctggtgctactgtgtgcacccatcggctcgacttttcttactcatccccatatcccccaccttgaacctgctcccaccccatctcacagCTCGGAGTCGCTGGCCAAGAAGCGCGCCATGCGCGTGGCCAGCCAGGCCTCCAAGGAGGCCTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- gcatgca
- - - - - - - - - - -tgtgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcccac