1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTCGCTCGGCCTGGCTGCTTACGCGGTGGGCAAGCTGAAGAGCGGCTCTTACTCACTGTCCATCAACGCCGCGGCCGTGGAGAAGCAGATTGGCAAGGCGgtgggtgtcggggcagcgcggcacggtgtggcggcatgcgggcgggggtatgcagggggagggcgcgggagcagggggcaccaagagcttctcagggacc...
species | Chlamydomonas reinhardtii |
transcript | EDP01096 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACTCACTGTCCATCAACGCCGCGGCCGTGGAGAAGCAGATTGGCAAGGCG GCTGGCGAGTACGAGGCAACACTGCTGGTCGGCGACCCCTCCACCCCCAAGEST: gi|16073069|gb|BI875065.1|BI875065
genomic: ACTCACTGTCCATCAACGCCGCGGCCGTGGAGAAGCAGATTGGCAAGGCGgtgggtgtcg ... ctcgccacagGCTGGCGAGTACGAGGCAACACTGCTGGTCGGCGACCCCTCCACCCCCAAG
EST: ACTCACTGTCCATCAACGCCGCGGCCGTGGAGAAGCAGATTGGCAAGGCG GCTGGCGAGTACGAGGCAACACTGCTGGTCGGCGACCCCTCCACCCCCAAGEST: gi|10769292|gb|AV620117.1|AV620117
genomic: ACTCACTGTCCATCAACGCCGCGGCCGTGGAGAAGCAGATTGGCAAGGCGgtgggtgtcg ... ctcgccacagGCTGGCGAGTACGAGGCAACACTGCTGGTCGGCGACCCCTCCACCCCCAAG
EST: ACTCACTGTCCATCAACGCCGCGGCCGTGGAGAAGCAGATTGGCAAGGCG GCTGGCGAGTACGAGGCAACACTGCTGGTCGGCGACCCCTCCACCCCCAAGEST: gi|14231263|gb|BG850079.1|BG850079
genomic: ACTCACTGTCCATCAACGCCGCGGCCGTGGAGAAGCAGATTGGCAAGGCGgtgggtgtcg ... ctcgccacagGCTGGCGAGTACGAGGCAACACTGCTGGTCGGCGACCCCTCCACCCCCAAG
EST: ACTCACTGTCCATCAACGCCGCGGCCGTGGAGAAGCAGATTGTCAAGGCG GCTGGCGAGTACCAGGCAACACTGCTGGTCGGCGACCCCTCCACCCCCAAGEST: gi|8287147|gb|BE024706.1|BE024706
genomic: ACTCACTGTCCATCAACGCCGCGGCCGTGGAGAAGCAGATTGGCAAGGCGgtgggtgtcg ... ctcgccacagGCTGGCGAGTACGAGGCAACACTGCTGGTCGGCGACCCCTCCACCCCCAAG
EST: ACTCACTGTCCATCAACGCCGCGGCCGTGGAGAAGCAGATTGGCAAGGCG GCTGGCGAGTACGAGGCAACACTGCTGGTCGGCGACCCCTCCACCCCCAAGEST: gi|6545331|gb|AV391115.1|AV391115
genomic: ACTCACTGTCCATCAACGCCGCGGCCGTGGAGAAGCAGATTGGCAAGGCGgtgggtgtcg ... ctcgccacagGCTGGCGAGTACGAGGCAACACTGCTGGTCGGCGACCCCTCCACCCCCAAG
EST: ACTCACTGTCCATCAACGCCGCGGCCGTGGAGAAGCAGATTGGCAAGGCG GCTGGCGAGTACGAGGCAACACTGCTGGTCGGCGACCCCTCCACCCCCAAGEST: gi|14241405|gb|BG860221.1|BG860221
genomic: ACTCACTGTCCATCAACGCCGCGGCCGTGGAGAAGCAGATTGGCAAGGCGgtgggtgtcg ... ctcgccacagGCTGGCGAGTACGAGGCAACACTGCTGGTCGGCGACCCCTCCACCCCCAAG
EST: ACTCACTGTCCATCAACGCCGCGGCCGTGGAGAAGCAGATTGGCAAGGCG GCTGGCGAGTACGAGGCAACACTGCTGGTCGGCGACCCCTCCACCCTCAAGEST: gi|15696147|gb|BI720452.1|BI720452
genomic: ACTCACTGTCCATCAACGCCGCGGCCGTGGAGAAGCAGATTGGCAAGGCGgtgggtgtcg ... ctcgccacagGCTGGCGAGTACGAGGCAACACTGCTGGTCGGCGACCCCTCCACCCCCAAG
EST: ACTCACTGTCCATCAACGCCGCGGCCGTGGAGAAGCAGATTGGCAAGGCG GCTGGCGAGTACGAGGCAACACTGCTGGTCGGCGACCCCTCCACCCCCAAGEST: gi|10127676|gb|BE726380.1|BE726380
genomic: ACTCACTGTCCATCAACGCCGCGGCCGTGGAGAAGCAGATTGGCAAGGCGgtgggtgtcg ... ctcgccacagGCTGGCGAGTACGAGGCAACACTGCTGGTCGGCGACCCCTCCACCCCCAAG
EST: ACTCACTGTCCATCAACGCCGCGGCCGTGGAGAAGCAGATTGGCAAGGCG GCTGGCGAGTACGATGCAACACTGCTGEST: gi|16430984|gb|BI996210.1|BI996210
genomic: ACTCACTGTCCATCAACGCCGCGGCCGTGGAGAAGCAGATTGGCAAGGCGgtgggtgtcg ... ctcgccacagGCTGGCGAGTACGAGGCAACACTGCTG
EST: ACTCACTGTCCATCAACGCCGCGGCCGTGGAGAAGCAGATTGGCAAGGCG GCTGGCGAGTACGAGGCAACACTGCTGGTCGGCGACCCCTCCACCCCCAAGEST: gi|15372690|gb|BI532116.1|BI532116
genomic: ACTCACTGTCCATCAACGCCGCGGCCGTGGAGAAGCAGATTGGCAAGGCGgtgggtgtcg ... ctcgccacagGCTGGCGAGTACGAGGCAACACTGCTGGTCGGCGACCCCTCCACCCCCAAG
EST: ACTCACTGTCCATCAACGCCGCGGCCGTGGAGAAGCAGATTGGCAAGGCG GCTGGCGAGTACGAGGCAACACTGCTGGTCGGCGACCCCTCCACCCCCAAGEST: gi|14231264|gb|BG850080.1|BG850080
genomic: ACTCACTGTCCATCAACGCCGCGGCCGTGGAGAAGCAGATTGGCAAGGCGgtgggtgtcg ... ctcgccacagGCTGGCGAGTACGAGGCAACACTGCTGGTCGGCGACCCCTCCACCCCCAAG
EST: ACTCACTGTCCATCAACGCCGCGGCCGTGGAGAAGCAGATTGTCAAGGCG GCTGGCGAGTACGAGGCAACACTGCTGGTCGGCGACCCCTCCACCCCCAAG
genomic: ACTCACTGTCCATCAACGCCGCGGCCGTGGAGAAGCAGATTGGCAAGGCGgtgggtgtcg ... ctcgccacagGCTGGCGAGTACGAGGCAACACTGCTGGTCGGCGACCCCTCCACCCCCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGCTCGGCCTGGCTGCTTACGCGGTGGGCAAGCTGAAGAGCGGCTCTTACTCACTGTCCATCAACGCCGCGGCCGTGGAGAAGCAGATTGGCAAGGCGgtgggtgtcggggcagcgcggcacggtgtggcggcatgcgggcgggggtatgcagggggagggcgcgggagcagggggcaccaagagcttctcagggacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggtatg