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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtactcgcatattatttgtcgggatgccgccagtctcggtgctgagctccgtggaattagcggacagcgtgccaatacgaaacccgtcaccttttatacagGGTTGCTGAGCTTTCTATCAGCGATGTGAAGGTGGTGATCAAGGGCGCTGACGGTTCGGCGATCAGCACGCTCACCGGGACGTACCCCAAGGCGGTGCTG

Basic information

species Chlamydomonas reinhardtii
transcript EDP01096
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10777756|gb|AV634436.1|AV634436
EST:     GTTATTGCTCAAGATGCTGAGCAAGCGCAAGT                         GGTTGCTGAGCTTTCTATCAGCGATGTGAAGGTGGTGATCAAGGGCGCTGA
genomic: GTTATTGCTCAAGATGCTGAGCAAGCGCAAGTgtaggtactc ... ttttatacagGGTTGCTGAGCTTTCTATCAGCGATGTGAAGGTGGTGATCAAGGGCGCTGA
EST: gi|14235090|gb|BG853906.1|BG853906
EST:     GTTATTGCTCAAGATGCTGAGCAAGCGCAAGT                         GGTTGCTGAGCTTTCTATCAGCGATGTGAAGGTGGTGATCAAGGGCGCTGA
genomic: GTTATTGCTCAAGATGCTGAGCAAGCGCAAGTgtaggtactc ... ttttatacagGGTTGCTGAGCTTTCTATCAGCGATGTGAAGGTGGTGATCAAGGGCGCTGA
EST: gi|16073069|gb|BI875065.1|BI875065
EST:     GTTATTGCTCAAGATGCTGAGCAAGCGCAAGT                         GGTTGCTGAGCTTTCTATCAGCGATGTGAAGGTGGTGATCAAGGGCGCTGA
genomic: GTTATTGCTCAAGATGCTGAGCAAGCGCAAGTgtaggtactc ... ttttatacagGGTTGCTGAGCTTTCTATCAGCGATGTGAAGGTGGTGATCAAGGGCGCTGA
EST: gi|8932613|gb|BE227374.1|BE227374
EST:     GTTATTGCTCAAGATGCTGAGCAAGCGCAAGT                         GGTTGCTGAGCTTTCTATCAGCGATGTGAAGGTGGTGATCAAGGGCGCTGA
genomic: GTTATTGCTCAAGATGCTGAGCAAGCGCAAGTgtaggtactc ... ttttatacagGGTTGCTGAGCTTTCTATCAGCGATGTGAAGGTGGTGATCAAGGGCGCTGA
EST: gi|14231263|gb|BG850079.1|BG850079
EST:     GTTATTGCTCAAGATGCTGAGCAAGCGCAAGT                         GGTTGCTGAGCTTTCTATCAGCGATGTGAAGGTGGTGATCAAGGGCGCTGA
genomic: GTTATTGCTCAAGATGCTGAGCAAGCGCAAGTgtaggtactc ... ttttatacagGGTTGCTGAGCTTTCTATCAGCGATGTGAAGGTGGTGATCAAGGGCGCTGA
EST: gi|10775030|gb|AV625853.1|AV625853
EST:     GTTATTGCTCAAGATGCTGAGCAAGCGCAAGT                         GGTTGCTGAGCTTTCTATCAGCGATGTGAAGGTGGTGATCAAGGGCGCTGA
genomic: GTTATTGCTCAAGATGCTGAGCAAGCGCAAGTgtaggtactc ... ttttatacagGGTTGCTGAGCTTTCTATCAGCGATGTGAAGGTGGTGATCAAGGGCGCTGA
EST: gi|8287147|gb|BE024706.1|BE024706
EST:     GTTATTGCTCAAGATGCTGAGCAAGCGCAAGT                         GGTTGCTGAGCTTTCTATCAGCGATGTGAAGGTGGTGATCAAGGGCGCTGA
genomic: GTTATTGCTCAAGATGCTGAGCAAGCGCAAGTgtaggtactc ... ttttatacagGGTTGCTGAGCTTTCTATCAGCGATGTGAAGGTGGTGATCAAGGGCGCTGA
EST: gi|14241405|gb|BG860221.1|BG860221
EST:     GTTATTGCTCAAGATGCTGAGCAAGCGCAAGT                         GGTTGCTGAGCTTTCTATCAGCGATGTGAAGGTGGTGATCAAGGGCGCTGA
genomic: GTTATTGCTCAAGATGCTGAGCAAGCGCAAGTgtaggtactc ... ttttatacagGGTTGCTGAGCTTTCTATCAGCGATGTGAAGGTGGTGATCAAGGGCGCTGA
EST: gi|15696147|gb|BI720452.1|BI720452
EST:     GTTATTGCTCAAGATGCTGAGCAAGCGCAAGT                         GGTTGCTGAGCTTTCTATCAGCGATGTGAAGGTGGTGATCAAGGGCGCTGA
genomic: GTTATTGCTCAAGATGCTGAGCAAGCGCAAGTgtaggtactc ... ttttatacagGGTTGCTGAGCTTTCTATCAGCGATGTGAAGGTGGTGATCAAGGGCGCTGA
EST: gi|10127676|gb|BE726380.1|BE726380
EST:     GTTATTGCTCAAGATGCTGAGCAAGCGCAAGT                         GGTTGCTGAGCTTTCTATCAGCGATGTGAAGGTGGTGATCAAGGGCGCTGA
genomic: GTTATTGCTCAAGATGCTGAGCAAGCGCAAGTgtaggtactc ... ttttatacagGGTTGCTGAGCTTTCTATCAGCGATGTGAAGGTGGTGATCAAGGGCGCTGA
EST: gi|16430984|gb|BI996210.1|BI996210
EST:     GTTATTGCTCAAGATGCTGAGCAAGCGCAAGT                         GGTTGCTGAGCTTTCTATCAGCGATGTGAAGGTGGTGATCAAGGGCGCTGA
genomic: GTTATTGCTCAAGATGCTGAGCAAGCGCAAGTgtaggtactc ... ttttatacagGGTTGCTGAGCTTTCTATCAGCGATGTGAAGGTGGTGATCAAGGGCGCTGA
EST: gi|15372690|gb|BI532116.1|BI532116
EST:     GTTATTGCTCAAGATGCTGAGCAAGCGCAAGT                         GGTTGCTGAGCTTTCTATCAGCGATGTGAAGGTGGTGATCAAGGGCGCTGA
genomic: GTTATTGCTCAAGATGCTGAGCAAGCGCAAGTgtaggtactc ... ttttatacagGGTTGCTGAGCTTTCTATCAGCGATGTGAAGGTGGTGATCAAGGGCGCTGA
EST: gi|10779637|gb|AV636317.1|AV636317
EST:     GTTATTGCTCAAGATGCTGAGCAAGCGCAAGT                         GGTTGCTGAGCTTTCTATCAGCGATGTGAAGGTGGTGATCAAGGGCGCTGA
genomic: GTTATTGCTCAAGATGCTGAGCAAGCGCAAGTgtaggtactc ... ttttatacagGGTTGCTGAGCTTTCTATCAGCGATGTGAAGGTGGTGATCAAGGGCGCTGA
EST: gi|14231264|gb|BG850080.1|BG850080
EST:     GTTATTGCTCAAGATGCTGAGCAAGCGCAAGT                         GGTTGCTGAGCTTTCTATCAGCGATGTGAAGGTGGTGATCAAGGGCGCTGA
genomic: GTTATTGCTCAAGATGCTGAGCAAGCGCAAGTgtaggtactc ... ttttatacagGGTTGCTGAGCTTTCTATCAGCGATGTGAAGGTGGTGATCAAGGGCGCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctccgtggaattagcggacagcgtgccaatacgaaacccgtcaccttttatacagGGTTGCTGAGCTTTCTATCAGCGATGTGAAGGTGGTGATCAAGGGCGCTGACGGTTCGGCGATCAGCACGCTCACCGGGACGTACCCCAAGGCGGTGCTG
                                        tcacctttt  CT-rich tract
                                             ttttataca  TA-rich tract