1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGGCCACGCCATCGAGACGGGCACCGGCTACGGCGTGTGGCTGCACGGCGAGGCGGTGGCGGCCGGCACCGTCATGGCGGCGGACCTGTCCTACCGCCTGgtgcgtaagggggggggcgggggtgcgggggcggggggcagccaccttctcatggaaaagcagaaatcgaagagggaaggtcatgggatggaagcgcaga...
species | Chlamydomonas reinhardtii |
transcript | EDP01025 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGGCGGTGGCGGCCGGCACCGTCATGGCGGCGGACCTGTCCTACCGCCTG GGCTGGATCGACCAGTCEST: gi|9441178|gb|BE441783.1|BE441783
genomic: AGGCGGTGGCGGCCGGCACCGTCATGGCGGCGGACCTGTCCTACCGCCTGgtgcgtaagg ... catcccacagGGCTGGATCGACCAGTC
EST: AGGCGGTGGCGGCCGGCACCGTCATGGCGGCAGACCTGTCCTACCGCCTG GGCTGGATCGACCAGTCGCTGCACGACCGCATTGTGGCGCTGATGCAGCGCEST: gi|23359839|gb|BU647659.1|BU647659
genomic: AGGCGGTGGCGGCCGGCACCGTCATGGCGGCGGACCTGTCCTACCGCCTGgtgcgtaagg ... catcccacagGGCTGGATCGACCAGTCGCTGCACGACCGCATTGTGGCGCTGATGCAGCGC
EST: AGGCGGTGGCGGCCGGCACCGTCATGGCGGCGGACCTGTCCTACCGCCTG GGCTGGATCGACCAGTCGCTGCACGACCGCATTGTGGCGCTGATGCAGCGC
genomic: AGGCGGTGGCGGCCGGCACCGTCATGGCGGCGGACCTGTCCTACCGCCTGgtgcgtaagg ... catcccacagGGCTGGATCGACCAGTCGCTGCACGACCGCATTGTGGCGCTGATGCAGCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCCACGCCATCGAGACGGGCACCGGCTACGGCGTGTGGCTGCACGGCGAGGCGGTGGCGGCCGGCACCGTCATGGCGGCGGACCTGTCCTACCGCCTGgtgcgtaagggggggggcgggggtgcgggggcggggggcagccaccttctcatggaaaagcagaaatcgaagagggaaggtcatgggatggaagcgcaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggatg