1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtaggtgcctgccgccgtgaccccaccctcttactcgccctaccggcccttcctgccaacgtaatggcctccccactgccctcggccccgcaccctgcagGCTGAGGTGGTGGCTGCCGACGAGCGTGAGAGCTCCGAGGGCGTGCGCGCCACGCTCAACCTGGGCCACACCTTTGGCCACGCCATCGAGACGGGCACCG
species | Chlamydomonas reinhardtii |
transcript | EDP01025 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCGACCCGGAGGCCATCGCGTACGCAGTGGAGCGCTCCTGCATCAACAAG GCTGAGGTGGTGGCTGCCGACGAGCGTGAGAGCTCCGAGGGCGTGCGCGCCEST: gi|9441178|gb|BE441783.1|BE441783
genomic: GCGACCCGGAGGCCATCGCGTACGCAGTGGAGCGCTCCTGCATCAACAAGgtggggcgca ... caccctgcagGCTGAGGTGGTGGCTGCCGACGAGCGTGAGAGCTCCGAGGGCGTGCGCGCC
EST: GCGACCCGGAGGCCATCGCATACGCCGTGGAGCGCTCCTGCATCAACAAG GCTGAGGTGGTGGCTGCCGACGAGCGTGAGAGCTCCGAGGGCGTGCGCGCCEST: gi|23359839|gb|BU647659.1|BU647659
genomic: GCGACCCGGAGGCCATCGCGTACGCAGTGGAGCGCTCCTGCATCAACAAGgtggggcgca ... caccctgcagGCTGAGGTGGTGGCTGCCGACGAGCGTGAGAGCTCCGAGGGCGTGCGCGCC
EST: GCGACCCGGAGGCCATCGCGTACGCAGTGGAGCGCTCCTGCATCAACAAG GCTGAGGTGGTGGCTGCCGACGAGCGTGAGAGCTCCGAGGGCGTGCGCGCCEST: gi|161806733|gb|FC088162.1|FC088162
genomic: GCGACCCGGAGGCCATCGCGTACGCAGTGGAGCGCTCCTGCATCAACAAGgtggggcgca ... caccctgcagGCTGAGGTGGTGGCTGCCGACGAGCGTGAGAGCTCCGAGGGCGTGCGCGCC
EST: GCGACCCGGAGGCCATCGCATACGCCGTGGAGCGCTCCTGCATCAACAAG GCTGAGGTGGTGGCTGCCGACGAGCGTGAGAGCTCCGAGGGCGTGCGCGCCEST: gi|10771946|gb|AV622769.1|AV622769
genomic: GCGACCCGGAGGCCATCGCGTACGCAGTGGAGCGCTCCTGCATCAACAAGgtggggcgca ... caccctgcagGCTGAGGTGGTGGCTGCCGACGAGCGTGAGAGCTCCGAGGGCGTGCGCGCC
EST: GCGACCCGGAGGCCATCGCGTACGCAGTGGAGCGCTCCTGCATCAACAAG GCTGAGGTGGTGGCTGCCGACGAGCGTGAGAGCTCCGAGGGCGTGCGCGCC
genomic: GCGACCCGGAGGCCATCGCGTACGCAGTGGAGCGCTCCTGCATCAACAAGgtggggcgca ... caccctgcagGCTGAGGTGGTGGCTGCCGACGAGCGTGAGAGCTCCGAGGGCGTGCGCGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtgcctgccgccgtgaccccaccctcttactcgccctaccggcccttcctgccaacgtaatggcctccccactgccctcggccccgcaccctgcagGCTGAGGTGGTGGCTGCCGACGAGCGTGAGAGCTCCGAGGGCGTGCGCGCCACGCTCAACCTGGGCCACACCTTTGGCCACGCCATCGAGACGGGCACCG
gtaggtg
- - - - - - - - - -accccac