1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cctataattacttctccgccaccactacgctcttcccagttcgcaaaaccctcgtccctccgccccgcgccccatgcctggcgtccatggccacacgcagGTGTGGGACAAGGCTCTGGAGAGCCGCATGGACCGCGGCGTAACCTTTCTGGCGCTGGGCGGCGGCGTGGTGGGCGACATGACGGGCTTCGCGGCCTCGT
species | Chlamydomonas reinhardtii |
transcript | EDP01025 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGTGCTGCCGGACGGCGAGGAGTACAAGAGCATGGAGGTGCTGGGCAAG GTGTGGGACAAGGCTCTGGAGAGCCGCATGGACCGCGGCGTAACCTTCCTGEST: gi|23364129|gb|BU651949.1|BU651949
genomic: TGGTGCTGCCGGACGGCGAGGAGTACAAGAGCATGGAGGTGCTGGGCAAGgtgcgtgggg ... ccacacgcagGTGTGGGACAAGGCTCTGGAGAGCCGCATGGACCGCGGCGTAACCTTTCTG
EST: TGGTGCTGCCGGACGGCGAGGAGTACAAGAGCATGGAGGTGCTGGGCAAG GTGTGGGACAAGGCTCTGGAGAGCCGCATGGACCGCGGCGTAACCTTTCTGEST: gi|15702565|gb|BI726870.1|BI726870
genomic: TGGTGCTGCCGGACGGCGAGGAGTACAAGAGCATGGAGGTGCTGGGCAAGgtgcgtgggg ... ccacacgcagGTGTGGGACAAGGCTCTGGAGAGCCGCATGGACCGCGGCGTAACCTTTCTG
EST: TGGTGCTGCCGGACGGCGAGGAGTACAAGAGCATGGAGGTGCTGGGCAAG GTGTGGGACAAGGCTCTGGAGAGCCGCATGGACCGCGGCGTAACCTTT
genomic: TGGTGCTGCCGGACGGCGAGGAGTACAAGAGCATGGAGGTGCTGGGCAAGgtgcgtgggg ... ccacacgcagGTGTGGGACAAGGCTCTGGAGAGCCGCATGGACCGCGGCGTAACCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctataattacttctccgccaccactacgctcttcccagttcgcaaaaccctcgtccctccgccccgcgccccatgcctggcgtccatggccacacgcagGTGTGGGACAAGGCTCTGGAGAGCCGCATGGACCGCGGCGTAACCTTTCTGGCGCTGGGCGGCGGCGTGGTGGGCGACATGACGGGCTTCGCGGCCTCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - ccaccac
- - - - - - - - - - - - - - - - - - - - tcgcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgcct