Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTACAACTCAAAGGCAAAGATGCTGATTTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatggggagtccagcgggcagcaggccccgccctagcggcccagcgccctagcggccagcgggcaaaactttggtgacatgtcggtgggaaatc...

Basic information

species Chlamydomonas reinhardtii
transcript EDP01014
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10771438|gb|AV622261.1|AV622261
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|6541420|gb|AV387204.1|AV387204
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|22049247|gb|BQ808682.1|BQ808682
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|16072805|gb|BI874801.1|BI874801
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|6545677|gb|AV391461.1|AV391461
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|15699394|gb|BI723699.1|BI723699
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|6547330|gb|AV393114.1|AV393114
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|9459947|gb|BE452988.1|BE452988
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|15703513|gb|BI727818.1|BI727818
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|6551764|gb|AV397548.1|AV397548
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|22049248|gb|BQ808683.1|BQ808683
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|10770536|gb|AV621361.1|AV621361
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|15702070|gb|BI726375.1|BI726375
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|10772320|gb|AV623143.1|AV623143
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|10768240|gb|AV619065.1|AV619065
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|10127282|gb|BE725986.1|BE725986
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|10768505|gb|AV619330.1|AV619330
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|22075401|gb|BQ824177.1|BQ824177
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|22068374|gb|BQ818313.1|BQ818313
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|22074620|gb|BQ823544.1|BQ823544
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|10775158|gb|AV625981.1|AV625981
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|15367881|gb|BI527307.1|BI527307
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|10771495|gb|AV622318.1|AV622318
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|10774206|gb|AV625029.1|AV625029
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|10778324|gb|AV635004.1|AV635004
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|9210852|gb|BE337767.1|BE337767
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|10772660|gb|AV623483.1|AV623483
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|22069490|gb|BQ819062.1|BQ819062
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|10781137|gb|AV637817.1|AV637817
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|49462901|gb|BP090814.1|BP090814
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|49460070|gb|BP087983.1|BP087983
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|15371920|gb|BI531346.1|BI531346
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|10774553|gb|AV625376.1|AV625376
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|10786290|gb|AV642962.1|AV642962
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|10780041|gb|AV636721.1|AV636721
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|10779383|gb|AV636063.1|AV636063
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|9210722|gb|BE337637.1|BE337637
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|22054373|gb|BQ811326.1|BQ811326
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|23360809|gb|BU648629.1|BU648629
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|10782783|gb|AV639455.1|AV639455
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|15699392|gb|BI723697.1|BI723697
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|49460858|gb|BP088771.1|BP088771
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|22068376|gb|BQ818315.1|BQ818315
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|10774359|gb|AV625182.1|AV625182
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|6544390|gb|AV390174.1|AV390174
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|15699393|gb|BI723698.1|BI723698
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|14226094|gb|BG844910.1|BG844910
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|10779865|gb|AV636545.1|AV636545
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|49458936|gb|BP086849.1|BP086849
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|10779845|gb|AV636525.1|AV636525
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|6542757|gb|AV388541.1|AV388541
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCG
EST: gi|6540887|gb|AV386671.1|AV386671
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|6547142|gb|AV392926.1|AV392926
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|10127537|gb|BE726241.1|BE726241
EST:     TTACGGAGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|22059526|gb|BQ813480.1|BQ813480
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|14240430|gb|BG859246.1|BG859246
EST:     TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
genomic: TTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGACG
EST: gi|10779351|gb|AV636031.1|AV636031
EST:     TACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCANAGAAGA                         GCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGAC
genomic: TACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCA-AGAAGAgtaagtcatg ... ctctgtgaagGCGTTAATAAGCGCGACGGCTTGGGTGCCCCGTTCGCCACCTACAACGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTTACAACTCAAAGGCAAAGATGCTGATTTACGGTGGCGACGAGCGTCCGGATACGCCGCAGCACATCGGCAAGAAGAgtaagtcatggggagtccagcgggcagcaggccccgccctagcggcccagcgccctagcggccagcgggcaaaactttggtgacatgtcggtgggaaatc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagcgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcggt