Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

tgtgtatgcatcgtagtggacgctagtaatctagcgggttgacgctgttttggtcaagcaggaaccggggccgctgacgggctgcatgctACCGC

Basic information

species Chlamydomonas reinhardtii
transcript EDP01014
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10771438|gb|AV622261.1|AV622261
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|6541420|gb|AV387204.1|AV387204
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|22049247|gb|BQ808682.1|BQ808682
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|16072805|gb|BI874801.1|BI874801
EST:     GNAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: G-AAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|6545677|gb|AV391461.1|AV391461
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|15699394|gb|BI723699.1|BI723699
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|6547330|gb|AV393114.1|AV393114
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|9459947|gb|BE452988.1|BE452988
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|15703513|gb|BI727818.1|BI727818
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|6551764|gb|AV397548.1|AV397548
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|22049248|gb|BQ808683.1|BQ808683
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|10770536|gb|AV621361.1|AV621361
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|15702070|gb|BI726375.1|BI726375
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|10772320|gb|AV623143.1|AV623143
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|10768240|gb|AV619065.1|AV619065
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|10127282|gb|BE725986.1|BE725986
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|10768505|gb|AV619330.1|AV619330
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|22075401|gb|BQ824177.1|BQ824177
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|22068374|gb|BQ818313.1|BQ818313
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|22074620|gb|BQ823544.1|BQ823544
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|10775158|gb|AV625981.1|AV625981
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|15367881|gb|BI527307.1|BI527307
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|10771495|gb|AV622318.1|AV622318
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|10774206|gb|AV625029.1|AV625029
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|10778324|gb|AV635004.1|AV635004
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|9210852|gb|BE337767.1|BE337767
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|10772660|gb|AV623483.1|AV623483
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|22069490|gb|BQ819062.1|BQ819062
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|10781137|gb|AV637817.1|AV637817
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|49462901|gb|BP090814.1|BP090814
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|49460070|gb|BP087983.1|BP087983
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|15371920|gb|BI531346.1|BI531346
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|10774553|gb|AV625376.1|AV625376
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|10786290|gb|AV642962.1|AV642962
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|10780041|gb|AV636721.1|AV636721
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|10779383|gb|AV636063.1|AV636063
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|9210722|gb|BE337637.1|BE337637
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|22054373|gb|BQ811326.1|BQ811326
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|23360809|gb|BU648629.1|BU648629
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|10782783|gb|AV639455.1|AV639455
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|15699392|gb|BI723697.1|BI723697
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|49460858|gb|BP088771.1|BP088771
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|22068376|gb|BQ818315.1|BQ818315
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|10774359|gb|AV625182.1|AV625182
EST:     GAAAGGTCCCNGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCC-GCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|6544390|gb|AV390174.1|AV390174
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|15699393|gb|BI723698.1|BI723698
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|14226094|gb|BG844910.1|BG844910
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|10779865|gb|AV636545.1|AV636545
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|49458936|gb|BP086849.1|BP086849
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGTG
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCG-C
EST: gi|10779845|gb|AV636525.1|AV636525
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|6542757|gb|AV388541.1|AV388541
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|6540887|gb|AV386671.1|AV386671
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|6547142|gb|AV392926.1|AV392926
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|10127537|gb|BE726241.1|BE726241
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGC
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|22059526|gb|BQ813480.1|BQ813480
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|14240430|gb|BG859246.1|BG859246
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC
EST: gi|10779351|gb|AV636031.1|AV636031
EST:     GAAAGGTCCCGCTACCTACAAGGACAATCAGG                         ACCGT
genomic: GAAAGGTCCCGCTACCTACAAGGACAATCAGGtgtgtatgca ... gctgcatgctACCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggttgacgctgttttggtcaagcaggaaccggggccgctgacgggctgcatgctACCGC
                                    cgctgac  putative branch site (score: 3)